Comments (5)
bx-python has been available for Python 3 for some months now, closing.
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What is the status of your complete python3 support effort? I recently worked my way through porting most of bx-python to python3 such that almost all of the tests pass (I couldn't figure out bgzf, the rest passes on python 3.5 and 3.6). If it might be helpful, I'd be happy to make a pull request.
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Would be brilliant to see bx-python available for python3
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Python 3 support in bx-python is incomplete (only recently begun). It is
not in any released version, which is what conda packages are built from.
On Fri, Aug 19, 2016 at 7:22 PM Lee Zamparo [email protected]
wrote:
For a linux-64 python 3.5.1 environment, the conda install instructions
fail:[zamparol@machine]$ python --version
Python 3.5.1 :: Anaconda 2.4.1 (64-bit)[zamparol@machine]$ conda --version
conda 4.1.11[zamparol@machine]$ conda install -c bioconda bx-python
Fetching package metadata .........
Solving package specifications: ....The following specifications were found to be in conflict:
- bx-python
- python 3.5* Use "conda info " to see the dependencies for each
package.This is strange, since setup.py requires Python version 3.3 greater? A
quick scan of the bioconda repo shows
bioconda/bioconda-recipes#1639 I'm not the
first to encounter this error. Have you successfully built & deployed on
python3 using conda?—
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Related Issues (20)
- Extend linting with ruff
- Tests do not run in PEP517 out-of-source build (gentoo) HOT 5
- error can't found bx.intervals module
- get on bx.align.maf.MAFIndexedAccess results in wrong alignment blocks HOT 4
- Importing ABC directly from collections was deprecated and will be removed in Python 3.10. Use collections.abc
- time.clock has been removed in Python 3.8
- ImportError: undefined symbol: PyUnicodeUCS2_FromStringAndSize HOT 1
- binned_bitsets_from_list errors when chromosome size is larger than set MAX (512M) HOT 1
- Got wrong positions on chomped query maf subset HOT 2
- How to dealing with maf files compressed with bzip2 or lzop ? HOT 4
- Failed to load seekbzip2 module when dealing with bz2 files HOT 1
- undefined symbol: PyUnicodeUCS2_FromStringAndSize HOT 3
- 0.8.11 Doesn't install some built shared libraries HOT 8
- documentation? HOT 3
- Add support to release linux aarch64 wheels HOT 1
- multiple sequence alignment
- upgrading bx-python to newer versions of python HOT 1
- ERROR Missing dependencies: oldest-supported-numpy HOT 2
- Build errors on osx-arm64 (bioconda) HOT 2
- 0.12.0: Fails to build: error: incompatible integer to pointer conversion assigning to 'void **' from 'int' HOT 1
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