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nsoranzo avatar nsoranzo commented on September 14, 2024 2

bx-python has been available for Python 3 for some months now, closing.

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adamlabadorf avatar adamlabadorf commented on September 14, 2024 1

What is the status of your complete python3 support effort? I recently worked my way through porting most of bx-python to python3 such that almost all of the tests pass (I couldn't figure out bgzf, the rest passes on python 3.5 and 3.6). If it might be helpful, I'd be happy to make a pull request.

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jxtx avatar jxtx commented on September 14, 2024 1

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TomSmithCGAT avatar TomSmithCGAT commented on September 14, 2024 1

Would be brilliant to see bx-python available for python3

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jxtx avatar jxtx commented on September 14, 2024

Python 3 support in bx-python is incomplete (only recently begun). It is
not in any released version, which is what conda packages are built from.

On Fri, Aug 19, 2016 at 7:22 PM Lee Zamparo [email protected]
wrote:

For a linux-64 python 3.5.1 environment, the conda install instructions
fail:

[zamparol@machine]$ python --version
Python 3.5.1 :: Anaconda 2.4.1 (64-bit)

[zamparol@machine]$ conda --version
conda 4.1.11

[zamparol@machine]$ conda install -c bioconda bx-python
Fetching package metadata .........
Solving package specifications: ....

The following specifications were found to be in conflict:

  • bx-python
  • python 3.5* Use "conda info " to see the dependencies for each
    package.

This is strange, since setup.py requires Python version 3.3 greater? A
quick scan of the bioconda repo shows
bioconda/bioconda-recipes#1639 I'm not the
first to encounter this error. Have you successfully built & deployed on
python3 using conda?


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