bxlab Goto Github PK

2018.09.01_eldred_gwas

bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

class-ibs-796-fall2013

class-ibs-796-fall2013-playground

cmdb-laptop-setup

Basic web and app developer Mac setup in Ansible playbooks.

cmdb-laptop-setup_windows

cmdb-plot-vcfs

cmdb-quantbio

Materials for Fall 2023 CMDB Quantitative Biology Bootcamp and Lab

cmdb-quantbio-prepwork

esperr

Code for ESPERR (Evolutionary and Sequence Pattern Extraction through Reduced Representation)

esperr-examples

Examples for running ESPERR to produce Regulatory Potential (RP) scores

esperr-genomeresearch-2006

Code and examples for ESPERR paper (Taylor et al. 2006, Genome Research)

galaxy-hackathon

Data intensive science for everyone.

galaxy_hic_database

A HiC database of chromatin interaction data from mapped, paired reads, HiFive multi-resolution heatmaps, and everything in between.

hifive

Tools for handling HiC and 5C data

hifive_paper

All of the scripts necessary to produce the analyses performed in the HiFive paper.

ladetector

LADetector package and scripts

metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

metawrap_paper

All data associated with writing the metaWRAP paper - data files, figure-making scripts, figures, and manuscript drafts

paper-2016.12-anderson-elife

Methods supporting https://doi.org/10.7554/eLife.29593.001

phosforus

Github repository for PHOSforUS predictor distribution

qbb2020

qbb2021

quasar_paper

quasar_paperanalysis

All scripts and information needed to perform all analyses and generate all figures from the HiFive QuASAR paper.

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

timeline_paper

Files associated the halite longitudinal analysis manuscript