burtonrj / cytocluster Goto Github PK
View Code? Open in Web Editor NEWA package for clustering high-dimensional cytometry data in Python.
License: Other
A package for clustering high-dimensional cytometry data in Python.
License: Other
Alas, I get an error on trying to install
conda create --name flowc python=3.10
conda activate flowc
pip install cytocluster
leads to an error:
ERROR: Cannot install cytocluster because these package versions have conflicting dependencies.
The conflict is caused by:
ensembleclustering 1.0.11 depends on kahypar==1.1.3
ensembleclustering 1.0.1 depends on kahypar==1.1.3
To fix this you could try to:
1. loosen the range of package versions you've specified
2. remove package versions to allow pip attempt to solve the dependency conflict
ERROR: ResolutionImpossible: for help visit https://pip.pypa.io/en/latest/topics/dependency-resolution/#dealing-with-dependency-conflicts
If then try to separately install kahypar
using
pip install kahypar
I get the follow errors:
Collecting kahypar
Using cached kahypar-1.0.tar.gz (8.0 MB)
Preparing metadata (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [8 lines of output]
Traceback (most recent call last):
File "<string>", line 2, in <module>
File "<pip-setuptools-caller>", line 34, in <module>
File "C:\Users\nelly\AppData\Local\Temp\pip-install-9bmjaav9\kahypar_17b055a634f5427fab2ec09e4eea68f0\setup.py", line 71, in <module>
long_description = fh.read()
File "C:\tools\miniconda3\envs\flowc\lib\encodings\cp1252.py", line 23, in decode
return codecs.charmap_decode(input,self.errors,decoding_table)[0]
UnicodeDecodeError: 'charmap' codec can't decode byte 0x9d in position 5786: character maps to <undefined>
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
Any thoughts much appreciated :) Thanks in advance for your time.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.