This code implements the method from the paper

• Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
• Author: Xin He [email protected]

See the file AUTHORS for information about additional authors and maintainers of this software.

See the file named README.txt for documentation about building and running the program.

After checking out the repo, do:

git submodule init
git submodule update --recursive
mkdir build
cd build
cmake ..
make

See the file named MAINTAINER_README for more hints on how to maintain this software.

See Travis-Ci for continuous integration.

• 'master':
• 'develop':
• 'bleeding-edge':