Name: Bryan Lunt
Type: User
Company: Department of Computer Science, UC San Diego
Bio: Currently working in the @UIUCSinhaLab . Future PI and/or wormfood.
Professional Yak Shaver.
Location: Urbana, Illinois
Blog: bryanjlunt.com
Bryan Lunt's Projects
Java bindings for the PBS DRMAA interface.
A tool to create residue-level mappings between PDB format structure files and HMM or other alignments.
PDB Tools Fork
pandas-based python parser for pointcloud data
The remote jupyter kernel/kernels administration utility
Better lossless compression for scientific data that stores float values in ASCII files.
A (relatively general) system for contact tracing of infectious diseases.
Read shell script environment variables into Python
Simple Numerical Object Transcription (SNOT) is a language similar to JSON meant for numerical computing.
Fork of Soaplab's Bioinfogrid-plugin for my own projects. See : http://soaplab.sourceforge.net/soaplab2/
Fork of Soaplab2 for my own projects. See : http://soaplab.sourceforge.net/soaplab2/
PBS plugin for soaplab2
Spearmint is a package to perform Bayesian optimization according to the algorithms outlined in the paper: Practical Bayesian Optimization of Machine Learning Algorithms. Jasper Snoek, Hugo Larochelle and Ryan P. Adams. Advances in Neural Information Processing Systems, 2012
StarCluster is an open source cluster-computing toolkit for Amazon's Elastic Compute Cloud (EC2).
The Super Family Tree programs from the Saier Lab, fixed and setup to run on PBS based supercomputers.
Theano implementation of Tree RNNs aka Recursive Neural Networks.
Several general Java tools and utility classes
an effort to create the canonical LaTeX style for typesetting UCSD doctoral dissertations
Currently unsorted, dockers for personal use.