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Bryan Lunt's Projects

pdb_backmapper icon pdb_backmapper

A tool to create residue-level mappings between PDB format structure files and HMM or other alignments.

rk icon rk

The remote jupyter kernel/kernels administration utility

snot_lang icon snot_lang

Simple Numerical Object Transcription (SNOT) is a language similar to JSON meant for numerical computing.

soaplab2 icon soaplab2

Fork of Soaplab2 for my own projects. See : http://soaplab.sourceforge.net/soaplab2/

spearmint icon spearmint

Spearmint is a package to perform Bayesian optimization according to the algorithms outlined in the paper: Practical Bayesian Optimization of Machine Learning Algorithms. Jasper Snoek, Hugo Larochelle and Ryan P. Adams. Advances in Neural Information Processing Systems, 2012

starcluster icon starcluster

StarCluster is an open source cluster-computing toolkit for Amazon's Elastic Compute Cloud (EC2).

tree_rnn icon tree_rnn

Theano implementation of Tree RNNs aka Recursive Neural Networks.

ucsd-thesis icon ucsd-thesis

an effort to create the canonical LaTeX style for typesetting UCSD doctoral dissertations

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