Current form's schema:
{"type": "object","name": "OPHTHALMOgenics Pipeline","description": "Pipeline aimed at helping the molecular diagnosis of cancer. It is aimed specifically at identifying all the genetic alterations that may influence susceptibility or resistance to approved drugs for clinical use . Pipeline analyzes DNA sequence of the genes and the presence/absence of clinically relevant rearrangements specified in selected probe.","properties": {"Parameters":{"description": "Pipeline execution global parameters","type": "object","properties": {"referenceGenomeVersion":{"description": ""Reference genome" (http://en.wikipedia.org/wiki/Reference_genome) version","required": true ,"title": "Reference Genome Version","default": "human/19/GRCh37","type":"string","enum":["human/19/GRCh37","human/19/LifeTechnologies","human/19/contigs","human/GRCh38/chr_contigs","human/GRCh38/chr_no_contigs","human/GRCh38/contigs","human/GRCh38/no_contigs","human/RNAseq/human/19/Ensembl/GRCh37/Annotation/NoPseudogenes","human/RNAseq/human/19/Ensembl/GRCh37/Annotation/SelectedBiotypes","human/RNAseq/human/19/Ensembl/GRCh37/Annotation/rRNA","human/RNAseq/human/19/Ensembl/GRCh37/Sequence/Bowtie2Index"]},"adapterSequences":{"description": "Adapter sequences used for DNA library generation in Trimmomatic (http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf) (fastaWithAdaptersEtc option)","required": true ,"title": "Adapter Sequences","default": "../param/adapters/Illumina/HiSeq-MiSeq/TruSeq3-PE.fa","type":"string","format":"dreampipe-file"},"reportProbeVersion":{"description": "Probe version (enrichment probes) used in bam statistics, callability and distance to probe annotation","required": false ,"title": "Report Probe Version","default": "OPHTHALMOgenics/V1-1","type":"string","enum":["OPHTHALMOgenics/V1","OPHTHALMOgenics/V1-1","OPHTHALMOgenics/V2_design","OPHTHALMOgenics/V2_report"]},"ensemblVersion":{"description": "Ensembl (http://www.ensembl.org/index.html) version","required": false ,"title": "Ensembl Version","default": "human/75-4","type":"string","enum":["ensembl/ensembl/human/75-2","ensembl/ensembl/human/79","ensembl/ensembl/human/BRCA1.BRCA2.TP53.v75","ensembl/human/75-2","ensembl/human/75-3","ensembl/human/75-4","ensembl/human/79","ensembl/human/BRCA1.BRCA2.TP53.v75","ensembl/human/BRCA1.BRCA2.TP53.v75-2","ensembl/mus-musculus/79-1","ensembl/saccharomyces-cerevisiae/75","human/72","human/75","human/75-1","human/75-2","human/75-3","human/75-4","human/79","human/BRCA1.BRCA2.TP53/V75_1","human/BRCA1.BRCA2.TP53/V75_2","mus-musculus/79","saccharomyces-cerevisiae/75"]},"distanceToProbeVersions":{"description": "Versions of the probes, used in the annotation step, for the calculation of the distance to probe","required": false ,"title": "Distance To Probe Versions","default": ["OPHTHALMOgenics/V1-1"],"type":"array","items":{"type":"string"},"enum":["Agilent/Agilent50MB","Agilent/Agilent50MB_extended200","Agilent/AgilentV4","Agilent/AgilentV4_UTR","Agilent/AgilentV5","Agilent/AgilentV5_UTR","Agilent/Agilent_SureSelect_ClinicalExome","Agilent/Agilent_humanallexon_V2_merged_extended200","Agilent/Agilent_humanallexon_V2_merged_nochr/data","Alejandro/data","AmpliSeqExome","HUCA/ITAV/V1","Haloplex_Clinic_v072013","ICGC_exome","ICGC_exome_extended200","IlluminaConfidentRegions","Illumina_ConfidentRegions_TruSight_One_V1_3","Illumina_TruSight_One/V1_1","Illumina_TruSight_One/V1_2","Illumina_TruSight_One/V1_3","Mouse_all_Exome/V1","NIST","Nimblegen/SeqCapExome/V3","OPHTHALMOgenics/V1","OPHTHALMOgenics/V1-1","OPHTHALMOgenics/V2_design","OPHTHALMOgenics/V2_report","OTOgenics/Homologs/V1","OTOgenics/OTOgenics/V1_design","OTOgenics/OTOgenics/V1_report","OTOgenics/OTOgenics/V2_design","OTOgenics/OTOgenics/V2_report","Oncogenics/Easy/V1","Oncogenics/Easy/V1_Homologs","Oncogenics/Easy/V1_covered","Oncogenics/Easy/V2_covered","Oncogenics/Easy/V5","Oncogenics/Germline/V4","Oncogenics/Germline/V5","Oncogenics/Germline/V5_report","Oncogenics/Homologous/Easy/V1","Oncogenics/Homologous/Germline/V1","Oncogenics/Oncogenics/V1_covered","Oncogenics/Oncogenics/V2_covered","Oncogenics/Oncogenics/V3_covered","Oncogenics/Oncogenics/V3_extended100","Oncogenics/Oncogenics/V3_extended50","Oncogenics/Oncogenics/V3_merged","Oncogenics/Oncogenics/V4_covered","Oncogenics/Oncogenics/V5","PMS2","Tusie_transcripts_BRCA1_BRCA2_TP53_EXTENDED/V1_0","colon_genes","dbSNP/144","nimblegen_SeqCap_EZ_Exome_v2_tiled","nimblegen_SeqCap_EZ_Exome_v2_tiled_extended200","uniovi/ONCOEPIC/V1"]},"positionGenomicDatabases":{"description": "Genomic databases used in annotation by position","required": false ,"title": "Position Genomic Databases","default": ["1000genomes/phase3-2","dbnsfp/3.0-1","cosmic/71-2","dbscSNV/20150107-1","dbsnp/all/142-2","dbsnp/clinvar/20150929-1","esp/6500-3","exac/0.3-2","hgmd/2015.1-3","icgc/19-1"],"type":"array","items":{"type":"string"},"enum":["1000genomes/phase3-1","1000genomes/phase3-2","bic/hg19","cll/20140217-3","cosmic/68-1","cosmic/71-1","cosmic/71-2","dbnsfp/2.8-2","dbnsfp/2.9-1","dbnsfp/3.0-1","dbscSNV/20150107-1","dbsnp/all/138-1","dbsnp/all/141-1","dbsnp/all/142-1","dbsnp/all/142-2","dbsnp/all/144-1","dbsnp/clinvar/20140303-1","dbsnp/clinvar/20150115-1","dbsnp/clinvar/20150305-1","dbsnp/clinvar/20150305-2","dbsnp/clinvar/20150629-1","dbsnp/clinvar/20150901-1","dbsnp/clinvar/20150929-1","dbsnp/common/137-1","dbsnp/oncogenicsV4/20150525-1","dgva/20140603-1","dlbcl-shm/20121012-3","esp/6500-1","esp/6500-2","esp/6500-3","exac/0.3-1","exac/0.3-2","hgmd/2014.1-2","hgmd/2014.1-3","hgmd/2015-2","hgmd/2015.1-3","icgc/17-1","icgc/18-1","icgc/19-1","repeat-masker/20140516-1","telcent/hg19-1","telcent/saccharomyces-cerevisiae/R64-1-1"]},"overlappingGenomicDatabases":{"description": "Genomic databases used in annotation by overlapping","required": false ,"title": "Overlapping Genomic Databases","default": ["pfam/20140516-1"],"type":"array","items":{"type":"string"},"enum":["1000genomes/phase3-1","bic/hg19","cll/20140217-3","cosmic/68-1","cosmic/71-1","dbnsfp/2.8-2","dbnsfp/2.9-1","dbsnp/all/138-1","dbsnp/all/141-1","dbsnp/all/142-1","dbsnp/all/144-1","dbsnp/clinvar/20140303-1","dbsnp/clinvar/20150115-1","dbsnp/clinvar/20150305-1","dbsnp/clinvar/20150305-2","dbsnp/clinvar/20150629-1","dbsnp/clinvar/20150901-1","dbsnp/common/137-1","dbsnp/oncogenicsV4/20150525-1","dgva/20140603-1","dlbcl-shm/20121012-3","esp/6500-1","esp/6500-2","exac/0.3-1","hgmd/2014.1-2","hgmd/2014.1-3","hgmd/2015-2","icgc/17-1","icgc/18-1","pfam/20140516-1","repeat-masker/20140516-1","telcent/hg19-1","telcent/saccharomyces-cerevisiae/R64-1-1"]},"minVarFreq":{"description": "Minimun mutation frequency (http://samtools.sourceforge.net/samtools.shtml)","required": true ,"title": "Min Var Freq","default": 0.15,"type":"number"},"md5ChecksumsFile":{"description": "One file containing all checksums for all input fastqs","required": false ,"title": "Md 5 Checksums File","type":"string","format":"dreampipe-file"},"threads":{"description": "Number of threads used in trimming and alignment","required": false ,"title": "Threads","default": 4,"type":"integer"},"mismatchesThreshold":{"description": "Maximum mismatches allowed in adapter in Trimmomatic (http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf) (seedMismatches option)","required": true ,"title": "Mismatches Threshold","default": 3,"type":"integer"},"palindromeThreshold":{"description": "Match accuracy between adapter-ligated reads in Trimmomatic (http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf) (palindromeClipThreshold option)","required": true ,"title": "Palindrome Threshold","default": 30,"type":"integer"},"simpleThreshold":{"description": "Match accuracy between adapter and read in Trimmomatic (http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf) (simpleClipThreshold option)","required": true ,"title": "Simple Threshold","default": 10,"type":"integer"},"headCrop":{"description": "commons.trimming.PairedEndScriptTask.headCrop","required": true ,"title": "Head Crop","default": 0,"type":"integer"},"aligner":{"description": "Aligner to be used. Choose between Bowtie2 (http://bowtie-bio.sourceforge.net/bowtie2/manual.shtml#what-is-bowtie-2), BWA (http://bio-bwa.sourceforge.net/bwa.shtml) or BWA_MEM (http://bio-bwa.sourceforge.net/bwa.shtml). Default is BWA_MEM","required": true ,"title": "Aligner","default": "bwa_mem","type":"string","enum":["bowtie2","bwa","bwa_mem"]},"gapOpen":{"description": "Maximum number of gap opens for aln command in BWA (http://bio-bwa.sourceforge.net/bwa.shtml) (-o option)","required": true ,"title": "Gap Open","default": 1,"type":"integer"},"mismatch":{"description": "Mismatch penalty for aln command in BWA (http://bio-bwa.sourceforge.net/bwa.shtml) (-M option)","required": true ,"title": "Mismatch","default": 3,"type":"integer"},"distance":{"description": "Fraction of allowed mismatches if the value is float, or maximum mismatches allowed if the value is an integer for aln command in BWA (http://bio-bwa.sourceforge.net/bwa.shtml) (-n option)","required": true ,"title": "Distance","default": 0.04,"type":"number"},"trim":{"description": "Minimum base quality for read trimming for aln command in BWA (http://bio-bwa.sourceforge.net/bwa.shtml) (-q option)","required": true ,"title": "Trim","default": 0,"type":"integer"},"clippingPenalty":{"description": "When performing SW extension, BWA-MEM keeps track of the best score reaching the end of query. If this score is larger than the best SW score minus the clipping penalty, clipping will not be applied.","required": false ,"title": "Clipping Penalty","default": 5,"type":"integer"},"homologousProbe":{"description": "Probe to use in homologous variant calling","required": false ,"title": "Homologous Probe","type":"string","enum":["Agilent/Agilent50MB","Agilent/Agilent50MB_extended200","Agilent/AgilentV4","Agilent/AgilentV4_UTR","Agilent/AgilentV5","Agilent/AgilentV5_UTR","Agilent/Agilent_SureSelect_ClinicalExome","Agilent/Agilent_humanallexon_V2_merged_extended200","Agilent/Agilent_humanallexon_V2_merged_nochr/data","Alejandro/data","AmpliSeqExome","HUCA/ITAV/V1","Haloplex_Clinic_v072013","ICGC_exome","ICGC_exome_extended200","IlluminaConfidentRegions","Illumina_ConfidentRegions_TruSight_One_V1_3","Illumina_TruSight_One/V1_1","Illumina_TruSight_One/V1_2","Illumina_TruSight_One/V1_3","Mouse_all_Exome/V1","NIST","Nimblegen/SeqCapExome/V3","OPHTHALMOgenics/V1","OPHTHALMOgenics/V1-1","OPHTHALMOgenics/V2_design","OPHTHALMOgenics/V2_report","OTOgenics/Homologs/V1","OTOgenics/OTOgenics/V1_design","OTOgenics/OTOgenics/V1_report","OTOgenics/OTOgenics/V2_design","OTOgenics/OTOgenics/V2_report","Oncogenics/Easy/V1","Oncogenics/Easy/V1_Homologs","Oncogenics/Easy/V1_covered","Oncogenics/Easy/V2_covered","Oncogenics/Easy/V5","Oncogenics/Germline/V4","Oncogenics/Germline/V5","Oncogenics/Germline/V5_report","Oncogenics/Homologous/Easy/V1","Oncogenics/Homologous/Germline/V1","Oncogenics/Oncogenics/V1_covered","Oncogenics/Oncogenics/V2_covered","Oncogenics/Oncogenics/V3_covered","Oncogenics/Oncogenics/V3_extended100","Oncogenics/Oncogenics/V3_extended50","Oncogenics/Oncogenics/V3_merged","Oncogenics/Oncogenics/V4_covered","Oncogenics/Oncogenics/V5","PMS2","Tusie_transcripts_BRCA1_BRCA2_TP53_EXTENDED/V1_0","colon_genes","dbSNP/144","nimblegen_SeqCap_EZ_Exome_v2_tiled","nimblegen_SeqCap_EZ_Exome_v2_tiled_extended200","uniovi/ONCOEPIC/V1"]},"rpkmFiles":{"description": "Set of rpkm files that will be used as background to do cnv calling ","required": false ,"title": "Rpkm Files","type":"array","items":{"type":"string"},"enum":["background","background_wey","tusie_rpkm_50_67","tusie_rpkm_samples","tusie_rpkm_samples_0","tusie_rpkm_samples_filtered","tusie_rpkm_samples_filtered_orginal","tussie_rpkm_23_49_filtered","ADN105_S1_ADN106_S2_rpkm.txt","ADN107_S1_rpkm.txt","HCE-10.P45_rpkm.txt","HCE-11.P46_rpkm.txt","HCE-12.P47_rpkm.txt","HCE-13.P48_rpkm.txt","HCE-14.P55_rpkm.txt","HCE-15.P58_rpkm.txt","HCE-16.P61_rpkm.txt","HCE-17.P3_rpkm.txt","HCE-18.P42_rpkm.txt","HCE-19.P44_rpkm.txt","HCE-20.P49E_rpkm.txt","HCE-21.P56_rpkm.txt","HCE-22.P60_rpkm.txt","HCE-23_filtered_rpkm.txt","HCE-24_filtered_rpkm.txt","HCE-25_filtered_rpkm.txt","HCE-26_filtered_rpkm.txt","HCE-27_filtered_rpkm.txt","HCE-28_filtered_rpkm.txt","HCE-29_filtered_rpkm.txt","HCE-30_filtered_rpkm.txt","HCE-31_filtered_rpkm.txt","HCE-32_filtered_rpkm.txt","HCE-33_filtered_rpkm.txt","HCE-34_filtered_rpkm.txt","HCE-35_filtered_rpkm.txt","HCE-36_filtered_rpkm.txt","HCE-37_filtered_rpkm.txt","HCE-38_filtered_rpkm.txt","HCE-39_filtered_rpkm.txt","HCE-40_filtered_rpkm.txt","HCE-41_filtered_rpkm.txt","HCE-42_filtered_rpkm.txt","HCE-43_filtered_rpkm.txt","HCE-44_filtered_rpkm.txt","HCE-45_filtered_rpkm.txt","HCE-46_filtered_rpkm.txt","HCE-47_filtered_rpkm.txt","HCE-48_filtered_rpkm.txt","HCE-49_filtered_rpkm.txt","HCE-50_rpkm.txt","HCE-51_rpkm.txt","HCE-52_rpkm.txt","HCE-53_rpkm.txt","HCE-54_rpkm.txt","HCE-55_rpkm.txt","HCE-56_rpkm.txt","HCE-57_rpkm.txt","HCE-58_rpkm.txt","HCE-59_rpkm.txt","HCE-6.P61_rpkm.txt","HCE-60_rpkm.txt","HCE-61_rpkm.txt","HCE-62_rpkm.txt","HCE-63_rpkm.txt","HCE-64_rpkm.txt","HCE-65_rpkm.txt","HCE-66_rpkm.txt","HCE-67_rpkm.txt","HCE-8.P4_rpkm.txt","HCE-9.P43_rpkm.txt","ONCOE.001_P01105_S1_rpkm.txt","ONCOE.001_P01105_filtered.txt","ONCOE.002_P01154_S1_rpkm.txt","ONCOE.002_P01154_filtered.txt","ONCOE.003_P01243_filtered.txt","ONCOE.004_P01273_filtered.txt","ONCOE.005_P01331_filtered.txt","ONCOE.006_P01351_filtered.txt","ONCOG.001_P01209_rpkm.txt","ONCOG.002_P01210_rpkm.txt","ONCOG.003_P01211_rpkm.txt","ONCOG.004_P01212_rpkm.txt","ONCOG.005_P01255_rpkm.txt","ONCOG.006_P00713_rpkm.txt","ONCOG.007_P00303_rpkm.txt","ONCOG.008_P00993_rpkm.txt","ONCOG.009_P01352.txt","ONCOG.009_P01352_rpkm.txt","ONCOG.010_P01256_filtered.txt","ONCOG.011_P01427_filtered.txt","ONCOG.012_P01440_filtered.txt","ONCOG.013_P01477_filtered.txt","P00303_rpkm.txt","P00492_S1_rpkm.txt","P00713_rpkm.txt","P00993_rpkm.txt","P01105_S1_rpkm.txt","P01154_S1_rpkm.txt","P01209_rpkm.txt","P01210_rpkm.txt","P01211_rpkm.txt","P01212_rpkm.txt","P01255_P01243_rpkm.txt","P01352.txt","pool_ADN105_S1_ADN106_S2_rpkm.txt","snp_array_ADN107_S1_rpkm.txt","snp_array_P00492_S1_rpkm.txt"]},"svd":{"description": "Number of SVD components to remove (zero). See below for more on this subject.","required": true ,"title": "Svd","default": 2,"type":"integer"},"threshold":{"description": "Threshold used in cnvs calling","required": true ,"title": "Threshold","default": 1,"type":"number"},"designProbeVersion":{"description": "Only if experiments design was ran with a different probe than the reports one, then this will be used in bams statistics, and annotation by distance to probe ","required": false ,"title": "Design Probe Version","default": "","type":"string","enum":["Agilent/Agilent50MB","Agilent/Agilent50MB_extended200","Agilent/AgilentV4","Agilent/AgilentV4_UTR","Agilent/AgilentV5","Agilent/AgilentV5_UTR","Agilent/Agilent_SureSelect_ClinicalExome","Agilent/Agilent_humanallexon_V2_merged_extended200","Agilent/Agilent_humanallexon_V2_merged_nochr/data","Alejandro/data","AmpliSeqExome","HUCA/ITAV/V1","Haloplex_Clinic_v072013","ICGC_exome","ICGC_exome_extended200","IlluminaConfidentRegions","Illumina_ConfidentRegions_TruSight_One_V1_3","Illumina_TruSight_One/V1_1","Illumina_TruSight_One/V1_2","Illumina_TruSight_One/V1_3","Mouse_all_Exome/V1","NIST","Nimblegen/SeqCapExome/V3","OPHTHALMOgenics/V1","OPHTHALMOgenics/V1-1","OPHTHALMOgenics/V2_design","OPHTHALMOgenics/V2_report","OTOgenics/Homologs/V1","OTOgenics/OTOgenics/V1_design","OTOgenics/OTOgenics/V1_report","OTOgenics/OTOgenics/V2_design","OTOgenics/OTOgenics/V2_report","Oncogenics/Easy/V1","Oncogenics/Easy/V1_Homologs","Oncogenics/Easy/V1_covered","Oncogenics/Easy/V2_covered","Oncogenics/Easy/V5","Oncogenics/Germline/V4","Oncogenics/Germline/V5","Oncogenics/Germline/V5_report","Oncogenics/Homologous/Easy/V1","Oncogenics/Homologous/Germline/V1","Oncogenics/Oncogenics/V1_covered","Oncogenics/Oncogenics/V2_covered","Oncogenics/Oncogenics/V3_covered","Oncogenics/Oncogenics/V3_extended100","Oncogenics/Oncogenics/V3_extended50","Oncogenics/Oncogenics/V3_merged","Oncogenics/Oncogenics/V4_covered","Oncogenics/Oncogenics/V5","PMS2","Tusie_transcripts_BRCA1_BRCA2_TP53_EXTENDED/V1_0","colon_genes","dbSNP/144","nimblegen_SeqCap_EZ_Exome_v2_tiled","nimblegen_SeqCap_EZ_Exome_v2_tiled_extended200","uniovi/ONCOEPIC/V1"]},"probeFile":{"description": "Other probes BED (http://www.ensembl.org/info/website/upload/bed.html#required) file not present in probes catalog","required": false ,"title": "Probe File","type":"string","format":"dreampipe-file"},"mapQual":{"description": "Minimum mapping quality (http://samtools.sourceforge.net/samtools.shtml)","required": true ,"title": "Map Qual","default": 20,"type":"integer"},"baseQual":{"description": "Minimum base quality (http://samtools.sourceforge.net/samtools.shtml)","required": true ,"title": "Base Qual","default": 10,"type":"integer"},"callabilityStatus":{"description": "Callability status of each probe region to be included in the output callabilityBed. Common used values are: All, Callable or LowCoverage","required": true ,"title": "Callability Status","default": "LowCoverage","type":"string","enum":["All","Callable","Uncallable","Strand","LowCoverage","Out"]},"subsamplePercent":{"description": "Percent to extract a random subsample of reads from the BAM (http://samtools.github.io/hts-specs/SAMv1.pdf) file","required": true ,"title": "Subsample Percent","default": 0.01,"type":"number"},"caller":{"description": "Variants caller. Choose between VarScan or DGCaller (DREAMgenics variant caller implementation)","required": false ,"title": "Caller","default": "VarScan","type":"string","enum":["DGCaller","VarScan"]},"BAQcomputation":{"description": "Base Alignment Quality computation (BAQ, is the Phred(http://en.wikipedia.org/wiki/Phred_quality_score)-scaled probability of a read base being misaligned) mode for mpileup command in Samtools (http://samtools.sourceforge.net/samtools.shtml). Set it to [-B, -E or -N]. Which means BAQ computation to be disable, extended or normal respectively","required": true ,"title": "BA Qcomputation","default": "-E","type":"string"},"downgrading":{"description": "Coefficient for downgrading mapping quality of reads containing excessive mismatches (http://samtools.sourceforge.net/samtools.shtml)","required": true ,"title": "Downgrading","default": 50,"type":"integer"},"maxCoverage":{"description": "Max per-BAM depth to avoid excessive memory usage","required": true ,"title": "Max Coverage","default": 100000,"type":"integer"},"minCoverage":{"description": "Minimum read depth at a position to make call variants(http://samtools.sourceforge.net/samtools.shtml)","required": true ,"title": "Min Coverage","default": 6,"type":"integer"},"minAltCount":{"description": "Minimum supporting reads at a position to call variants (http://samtools.sourceforge.net/samtools.shtml) and variant context stats annotation","required": true ,"title": "Min Alt Count","default": 3,"type":"integer"},"minAvgQual":{"description": "Minimum base quality at a position to count a read (http://samtools.sourceforge.net/samtools.shtml)","required": true ,"title": "Min Avg Qual","default": 15,"type":"integer"},"minFreqHomoz":{"description": "Minimum frequency to call homozygote (http://samtools.sourceforge.net/samtools.shtml)","required": true ,"title": "Min Freq Homoz","default": 0.75,"type":"number"},"callerPValue":{"description": "P-value threshold for calling variants (http://samtools.sourceforge.net/samtools.shtml)","required": true ,"title": "Caller P Value","default": 0.05,"type":"number"},"adjVarFreq":{"description": "VarScan adj-var-freq param (Trio calling mode)","required": true ,"title": "Adj Var Freq","default": 0.1,"type":"number"},"adjPValue":{"description": "VarScan adj-p-value param (Trio calling mode)","required": true ,"title": "Adj P Value","default": 0.05,"type":"number"},"callerMode":{"description": "Caller mode: normal or trio","required": false ,"title": "Caller Mode","default": "Normal","type":"string","enum":["Normal","Trio"]},"dgCallerGenomicDatabases":{"description": "Genomic databases used to find matches by DGCaller","required": false ,"title": "Dg Caller Genomic 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