🖥️🌿 Browser-based JupyterHub for Brightway (built on WASM, either based on emscripten-forge or on Pyodide)
Home Page: https://live.brightway.dev
License: BSD 3-Clause "New" or "Revised" License
Running:
import micropip
await micropip.install(
'https://files.brightway.dev/fs-2.5.1-py2.py3-none-any.whl'
)
import os
os.environ["BRIGHTWAY_DIR"] = "/tmp/"
await micropip.install('bw2io==0.9.dev23', keep_going = True)
await micropip.install('bw2calc==2.0.dev14', keep_going = True)
await micropip.install('bw2data==4.0.dev28', keep_going = True)
import bw2data
import bw2calc
import bw2io
bw2io.add_example_database(searchable=False)Leads to the following error:
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
Cell In[3], line 1
----> 1 bw2io.add_example_database(searchable=False)
File /lib/python3.11/site-packages/bw2io/data/__init__.py:471, in add_example_database(overwrite, searchable)
469 importer.apply_strategies()
470 importer.match_database(fields=["name"])
--> 471 importer.write_database(activate_parameters=True, searchable=searchable)
473 group = "Mobility exchanges"
474 Group.delete().where(Group.name == group).execute()
File /lib/python3.11/site-packages/bw2io/importers/excel.py:282, in ExcelImporter.write_database(self, **kwargs)
280 """Same as base ``write_database`` method, but ``activate_parameters`` is True by default."""
281 kwargs["activate_parameters"] = kwargs.get("activate_parameters", True)
--> 282 super(ExcelImporter, self).write_database(**kwargs)
File /lib/python3.11/site-packages/bw2io/importers/base_lci.py:278, in LCIImporter.write_database(self, data, delete_existing, backend, activate_parameters, db_name, searchable, **kwargs)
275 self.write_database_parameters(activate_parameters, delete_existing)
277 existing.update(data)
--> 278 db.write(existing, searchable=searchable)
280 if activate_parameters:
281 self._write_activity_parameters(activity_parameters)
File /lib/python3.11/site-packages/bw2data/project.py:432, in writable_project(wrapped, instance, args, kwargs)
429 @wrapt.decorator
430 def writable_project(wrapped, instance, args, kwargs):
431 warnings.warn("`writable_project` is obsolete and does nothing", DeprecationWarning)
--> 432 return wrapped(*args, **kwargs)
File /lib/python3.11/site-packages/bw2data/backends/base.py:525, in SQLiteBackend.write(self, data, process, searchable)
523 if data:
524 try:
--> 525 self._efficient_write_many_data(data)
526 except:
527 # Purge all data from database, then reraise
528 self.delete(warn=False)
File /lib/python3.11/site-packages/bw2data/backends/base.py:464, in SQLiteBackend._efficient_write_many_data(self, data, indices)
461 self.delete(keep_params=True, warn=False, vacuum=False)
462 exchanges, activities = [], []
--> 464 for index, (key, ds) in enumerate(tqdm_wrapper(data.items(), getattr(config, "is_test"))):
465 exchanges, activities = self._efficient_write_dataset(
466 index, key, ds, exchanges, activities
467 )
469 if activities:
AttributeError: 'Config' object has no attribute 'is_test'With
resolved, the build process now fails to find the Brightway packages added in
to the conda-forge channel under the dev label (according to CFEP-05):
__
__ ______ ___ ____ _____ ___ / /_ ____ _
/ / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/
/ /_/ / / / / / / /_/ / / / / / / /_/ / /_/ /
/ .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/
/_/
warning libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
error libmamba Could not solve for environment specs
The following packages are incompatible
├─ bw2calc 2.0.dev13* does not exist (perhaps a typo or a missing channel);
├─ bw2data 4.0.dev21* is uninstallable because it conflicts with any installable versions previously reported;
└─ bw2io 0.9.dev21* is uninstallable because it requires
└─ bw2calc >=1.7.4 , which does not exist (perhaps a missing channel).
Related discussion:
Link collection:
Checklist:
paper.mdv1.0.0 with @cmutelThe publication files have been added to the joss branch.
As per
we can only use the conda-forge and emscripten-forge channels to build the xeus-python kernel at the moment:
Only no-arch packages from conda-forge and emscripten-forge can be installed.
While I was unable to find specific guidance in the conda-forge documentation, it seems (cf. the pandas package) that packages on the conda-forge channel can have development versions also.
Official guidance by the conda-forge team is provided in CFEP05 (according to answers to my question in the conda-forge Element channel).
We should therefore add the dev versions, which are currently only on the cmutel channel to the conda-forge channel.
Calling
bw2io.add_example_database(searchable=False)causes an error:
File /lib/python3.11/site-packages/fs/osfs.py:226, in OSFS._make_access_from_stat(cls, stat_result)
224 access["uid"] = uid = stat_result.st_uid
225 if not _WINDOWS_PLATFORM:
--> 226 import grp
227 import pwd
229 try:
ModuleNotFoundError: The module 'grp' is removed from the Python standard library in the Pyodide distribution due to browser limitations.
See https://pyodide.org/en/stable/usage/loading-packages.html for more details.
While this was patched by @cmutel in:
It would be best to switch to fsspec in bw_processing.
...like here:
Imports seem to be broken. environment.yml
name: xeus-python-kernel
channels:
- conda-forge
- nodefaults
dependencies:
- matplotlib:
channels:
- https://repo.mamba.pm/emscripten-forge
- numpy:
channels:
- https://repo.mamba.pm/emscripten-forge
- pandas:
channels:
- https://repo.mamba.pm/emscripten-forge
- tqdm:
channels:
- conda-forge
gives:
Currently, an error is raised when trying to query a SQLite database. This affects the use of peewee:
The present workaround is to not use /drive:
(...) I think it because the the current directory (/drive) is not a MEMFS (unlike the rest of the file system), but rather a DriveFS used, from what I understand, for notebook persistance. Probably it's even less POSIX compliant than MEMFS, which becomes an issue for sqlite. If you write in any other folder say /tmp/ the above example would work.
Tested in the Pyodide 0.24.0 REPL:
bw2calc==2.0.dev14 🎉bw2io==0.9.dev21 🤨ValueError: Can't find a pure Python 3 wheel for: 'docopt', 'unicodecsv', 'ps
util'
...magically worked the second time?!
bw2data==4.0.dev25 🎉 __ _____ _ _ ___
\ \/ / _ \ | | / __|
> < __/ |_| \__ \
/_/\_\___|\__,_|___/
xeus-python: a Jupyter kernel for Python
Python 3.10.2
import peewee
---------------------------------------------------------------------------
ModuleNotFoundError Traceback (most recent call last)
/tmp/xpython_42/3073019139.py in <cell line: 1>()
----> 1 import peewee
ModuleNotFoundError: No module named 'peewee'
| package | pure 🐍? | issue | solution |
|---|---|---|---|
| lxml | no | not pure 🐍 | build for web assembly |
| numpy | no | none | |
| openpyxl | yes | none | |
| psutil | no | won't work in sandboxed WASM env | add option in code to ignore calls to this package |
| pyprind | no, BUT | requires psutil |
replace with tqdm |
| requests | yes | none | |
| scipy | no | none | |
| tqdm | yes | none | |
| unidecode | yes | none | |
| voluptuous | yes | none | |
| xlrd | yes | none | |
| xlsxwriter | yes | none | |
| peewee | no | not pure 🐍 | build for web assembly |
| woosh | yes | none | |
| wrapt | yes | none | |
| fasteners | yes | likely won't work | remove as per discussion with @cmutel |
| docopt | no | not pure 🐍 | replace with pure-python docopt-ng |
| appdirs | yes | package deprecated | replace with platformdirs |
| fs | yes | none | |
| matplotlib | no | none | |
| tabulate | yes | none |
conda-tree depends -t brightway2
brightway25_nosolver==1.0.6
├─ bw2analyzer 0.11.4 [required: >=0.11.4]
│ ├─ bw2calc 2.0.dev12 [required: any]
│ │ ├─ bw_processing 0.8.2 [required: >=0.8]
│ │ │ ├─ fs 2.4.15 [required: any]
│ │ │ │ ├─ appdirs 1.4.4 [required: >=1.4.3,<2]
│ │ │ │ │ └─ python 3.11.3 [required: any]
│ │ │ │ │ ├─ bzip2 1.0.8 [required: >=1.0.8,<2.0a0]
│ │ │ │ │ ├─ libexpat 2.5.0 [required: >=2.5.0,<3.0a0]
│ │ │ │ │ ├─ libffi 3.4.2 [required: >=3.4,<4.0a0]
│ │ │ │ │ ├─ libsqlite 3.40.0 [required: >=3.40.0,<4.0a0]
│ │ │ │ │ │ └─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ │ │ ├─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ │ │ ├─ ncurses 6.3 [required: >=6.3,<7.0a0]
│ │ │ │ │ ├─ openssl 3.1.0 [required: >=3.1.0,<4.0a0]
│ │ │ │ │ │ └─ ca-certificates 2022.12.7 [required: any]
│ │ │ │ │ ├─ readline 8.2 [required: >=8.2,<9.0a0]
│ │ │ │ │ │ └─ ncurses 6.3 [required: >=6.3,<7.0a0]
│ │ │ │ │ ├─ tk 8.6.12 [required: >=8.6.12,<8.7.0a0]
│ │ │ │ │ │ └─ libzlib 1.2.13 [required: >=1.2.11,<1.3.0a0]
│ │ │ │ │ ├─ tzdata 2023c [required: any]
│ │ │ │ │ ├─ xz 5.2.6 [required: >=5.2.6,<6.0a0]
│ │ │ │ │ └─ pip 23.0.1 [required: any]
│ │ │ │ │ ├─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ setuptools 67.6.1 [required: any]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ └─ wheel 0.40.0 [required: any]
│ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ pytz 2023.3 [required: any]
│ │ │ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ setuptools 67.6.1 [required: any]
│ │ │ │ │ └─ dependencies of setuptools displayed above
│ │ │ │ └─ six 1.16.0 [required: >=1.10.0,<2]
│ │ │ │ └─ python 3.11.3 [required: any]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ ├─ numpy 1.24.2 [required: any]
│ │ │ │ ├─ libblas 3.9.0 [required: >=3.9.0,<4.0a0]
│ │ │ │ │ └─ libopenblas 0.3.21 [required: >=0.3.21,<1.0a0]
│ │ │ │ │ ├─ libgfortran 5.0.0 [required: 5.*]
│ │ │ │ │ │ └─ libgfortran5 12.2.0 [required: any]
│ │ │ │ │ │ └─ llvm-openmp 16.0.0 [required: >=8.0.0]
│ │ │ │ │ ├─ libgfortran5 12.2.0 [required: >=11.3.0]
│ │ │ │ │ │ └─ dependencies of libgfortran5 displayed above
│ │ │ │ │ └─ llvm-openmp 16.0.0 [required: >=14.0.4]
│ │ │ │ ├─ libcblas 3.9.0 [required: >=3.9.0,<4.0a0]
│ │ │ │ │ └─ libblas 3.9.0 [required: 3.9.0, 16_osxarm64_openblas]
│ │ │ │ │ └─ dependencies of libblas displayed above
│ │ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ │ ├─ liblapack 3.9.0 [required: >=3.9.0,<4.0a0]
│ │ │ │ │ └─ libblas 3.9.0 [required: 3.9.0, 16_osxarm64_openblas]
│ │ │ │ │ └─ dependencies of libblas displayed above
│ │ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ ├─ pandas 2.0.0 [required: any]
│ │ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ │ ├─ numpy 1.24.2 [required: >=1.23.5,<2.0a0]
│ │ │ │ │ └─ dependencies of numpy displayed above
│ │ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ python-dateutil 2.8.2 [required: >=2.8.1]
│ │ │ │ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ └─ six 1.16.0 [required: >=1.5]
│ │ │ │ │ └─ dependencies of six displayed above
│ │ │ │ ├─ python-tzdata 2023.3 [required: >=2022a]
│ │ │ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ │ └─ pytz 2023.3 [required: >=2020.1]
│ │ │ │ └─ dependencies of pytz displayed above
│ │ │ └─ python 3.11.3 [required: >=3.5]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ matrix_utils 0.2.5 [required: >=0.2.5]
│ │ │ ├─ bw_processing 0.8.2 [required: >=0.8]
│ │ │ │ └─ dependencies of bw_processing displayed above
│ │ │ ├─ numpy 1.24.2 [required: any]
│ │ │ │ └─ dependencies of numpy displayed above
│ │ │ ├─ pandas 2.0.0 [required: any]
│ │ │ │ └─ dependencies of pandas displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ ├─ scipy 1.10.1 [required: any]
│ │ │ │ ├─ libblas 3.9.0 [required: >=3.9.0,<4.0a0]
│ │ │ │ │ └─ dependencies of libblas displayed above
│ │ │ │ ├─ libcblas 3.9.0 [required: >=3.9.0,<4.0a0]
│ │ │ │ │ └─ dependencies of libcblas displayed above
│ │ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ │ ├─ libgfortran 5.0.0 [required: 5.*]
│ │ │ │ │ └─ dependencies of libgfortran displayed above
│ │ │ │ ├─ libgfortran5 12.2.0 [required: >=11.3.0]
│ │ │ │ │ └─ dependencies of libgfortran5 displayed above
│ │ │ │ ├─ liblapack 3.9.0 [required: >=3.9.0,<4.0a0]
│ │ │ │ │ └─ dependencies of liblapack displayed above
│ │ │ │ ├─ numpy 1.24.2 [required: >=1.23.5,<2.0a0]
│ │ │ │ │ └─ dependencies of numpy displayed above
│ │ │ │ ├─ pooch 1.7.0 [required: any]
│ │ │ │ │ ├─ packaging 23.0 [required: >=20.0]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ platformdirs 3.2.0 [required: >=2.5.0]
│ │ │ │ │ │ ├─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ │ └─ typing-extensions 4.5.0 [required: >=4.5]
│ │ │ │ │ │ └─ typing_extensions 4.5.0 [required: 4.5.0, pyha770c72_0]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ └─ requests 2.28.2 [required: >=2.19.0]
│ │ │ │ │ ├─ certifi 2022.12.7 [required: >=2017.4.17]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ charset-normalizer 3.1.0 [required: >=2,<4]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ idna 3.4 [required: >=2.5,<4]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ python 3.11.3 [required: >=3.7,<4.0]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ └─ urllib3 1.26.15 [required: >=1.21.1,<1.27]
│ │ │ │ │ ├─ brotlipy 0.7.0 [required: >=0.6.0]
│ │ │ │ │ │ ├─ cffi 1.15.1 [required: >=1.0.0]
│ │ │ │ │ │ │ ├─ libffi 3.4.2 [required: >=3.4,<4.0a0]
│ │ │ │ │ │ │ ├─ pycparser 2.21 [required: any]
│ │ │ │ │ │ │ │ └─ python 3.11.3 [required: ==2.7.*|>=3.4]
│ │ │ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ │ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ │ │ ├─ certifi 2022.12.7 [required: any]
│ │ │ │ │ │ └─ dependencies of certifi displayed above
│ │ │ │ │ ├─ cryptography 40.0.1 [required: >=1.3.4]
│ │ │ │ │ │ ├─ cffi 1.15.1 [required: >=1.12]
│ │ │ │ │ │ │ └─ dependencies of cffi displayed above
│ │ │ │ │ │ ├─ openssl 3.1.0 [required: >=3.1.0,<4.0a0]
│ │ │ │ │ │ │ └─ dependencies of openssl displayed above
│ │ │ │ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ │ │ ├─ idna 3.4 [required: >=2.0.0]
│ │ │ │ │ │ └─ dependencies of idna displayed above
│ │ │ │ │ ├─ pyopenssl 23.1.1 [required: >=0.14]
│ │ │ │ │ │ ├─ cryptography 40.0.1 [required: >=38.0.0,<41]
│ │ │ │ │ │ │ └─ dependencies of cryptography displayed above
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ pysocks 1.7.1 [required: >=1.5.6,<2.0,!=1.5.7]
│ │ │ │ │ │ ├─ __unix [required: any]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.8]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ └─ python 3.11.3 [required: <4.0]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ └─ stats_arrays 0.6.5 [required: any]
│ │ │ ├─ numpy 1.24.2 [required: any]
│ │ │ │ └─ dependencies of numpy displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ scipy 1.10.1 [required: any]
│ │ │ └─ dependencies of scipy displayed above
│ │ ├─ numpy 1.24.2 [required: >=1.20]
│ │ │ └─ dependencies of numpy displayed above
│ │ ├─ python 3.11.3 [required: any]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ scipy 1.10.1 [required: any]
│ │ │ └─ dependencies of scipy displayed above
│ │ ├─ setuptools 67.6.1 [required: any]
│ │ │ └─ dependencies of setuptools displayed above
│ │ └─ stats_arrays 0.6.5 [required: any]
│ │ └─ dependencies of stats_arrays displayed above
│ ├─ bw2data 4.0.dev18 [required: any]
│ │ ├─ appdirs 1.4.4 [required: >=1.4.4]
│ │ │ └─ dependencies of appdirs displayed above
│ │ ├─ bw2parameters 0.7 [required: >=0.6.6]
│ │ │ ├─ asteval 0.9.29 [required: any]
│ │ │ │ ├─ numpy 1.24.2 [required: >=1.12]
│ │ │ │ │ └─ dependencies of numpy displayed above
│ │ │ │ ├─ pip 23.0.1 [required: any]
│ │ │ │ │ └─ dependencies of pip displayed above
│ │ │ │ ├─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ └─ setuptools-scm 7.1.0 [required: any]
│ │ │ │ ├─ packaging 23.0 [required: >=20.0]
│ │ │ │ │ └─ dependencies of packaging displayed above
│ │ │ │ ├─ python 3.11.3 [required: >=3.8]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ setuptools 67.6.1 [required: >=45]
│ │ │ │ │ └─ dependencies of setuptools displayed above
│ │ │ │ ├─ tomli 2.0.1 [required: >=1.0.0]
│ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ └─ typing-extensions 4.5.0 [required: any]
│ │ │ │ └─ dependencies of typing-extensions displayed above
│ │ │ ├─ astunparse 1.6.3 [required: any]
│ │ │ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ └─ six 1.16.0 [required: >=1.6.1,<2.0]
│ │ │ │ └─ dependencies of six displayed above
│ │ │ ├─ numpy 1.24.2 [required: any]
│ │ │ │ └─ dependencies of numpy displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ stats_arrays 0.6.5 [required: any]
│ │ │ └─ dependencies of stats_arrays displayed above
│ │ ├─ bw_processing 0.8.2 [required: >=0.8]
│ │ │ └─ dependencies of bw_processing displayed above
│ │ ├─ docopt 0.6.2 [required: >=0.6.2]
│ │ │ └─ python 3.11.3 [required: any]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ fasteners 0.17.3 [required: >=0.14.1]
│ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ lxml 4.9.2 [required: >=4.6]
│ │ │ ├─ libxml2 2.10.3 [required: >=2.10.3,<2.11.0a0]
│ │ │ │ ├─ icu 72.1 [required: >=72.1,<73.0a0]
│ │ │ │ ├─ libiconv 1.17 [required: >=1.17,<2.0a0]
│ │ │ │ ├─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ │ └─ xz 5.2.6 [required: >=5.2.6,<6.0a0]
│ │ │ ├─ libxslt 1.1.37 [required: >=1.1.37,<2.0a0]
│ │ │ │ └─ libxml2 2.10.3 [required: >=2.10.3,<2.11.0a0]
│ │ │ │ └─ dependencies of libxml2 displayed above
│ │ │ ├─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ numpy 1.24.2 [required: >=1.20]
│ │ │ └─ dependencies of numpy displayed above
│ │ ├─ peewee 3.16.0 [required: >=3.14.4]
│ │ │ ├─ libsqlite 3.40.0 [required: >=3.40.0,<4.0a0]
│ │ │ │ └─ dependencies of libsqlite displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ psutil 5.9.4 [required: >=5.8]
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ pyprind 2.11.2 [required: >=2.11]
│ │ │ ├─ psutil 5.9.4 [required: >=3.2.0]
│ │ │ │ └─ dependencies of psutil displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ python 3.11.3 [required: >=3.9]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ requests 2.28.2 [required: >=2.25]
│ │ │ └─ dependencies of requests displayed above
│ │ ├─ scipy 1.10.1 [required: >=1.6]
│ │ │ └─ dependencies of scipy displayed above
│ │ ├─ stats_arrays 0.6.5 [required: >=0.6.5]
│ │ │ └─ dependencies of stats_arrays displayed above
│ │ ├─ tqdm 4.65.0 [required: any]
│ │ │ ├─ colorama 0.4.6 [required: any]
│ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ voluptuous 0.13.1 [required: >=0.12]
│ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ whoosh 2.7.4 [required: any]
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ └─ wrapt 1.15.0 [required: >=1.12]
│ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ └─ dependencies of python displayed above
│ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ ├─ matplotlib-base 3.7.1 [required: any]
│ │ ├─ certifi 2022.12.7 [required: >=2020.06.20]
│ │ │ └─ dependencies of certifi displayed above
│ │ ├─ contourpy 1.0.7 [required: >=1.0.1]
│ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ ├─ numpy 1.24.2 [required: >=1.16]
│ │ │ │ └─ dependencies of numpy displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ cycler 0.11.0 [required: >=0.10]
│ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ fonttools 4.39.3 [required: >=4.22.0]
│ │ │ ├─ brotli 1.0.9 [required: any]
│ │ │ │ ├─ brotli-bin 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ │ ├─ libbrotlidec 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ │ │ └─ libbrotlicommon 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ │ └─ libbrotlienc 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ │ └─ libbrotlicommon 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ ├─ libbrotlidec 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ │ └─ dependencies of libbrotlidec displayed above
│ │ │ │ └─ libbrotlienc 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ └─ dependencies of libbrotlienc displayed above
│ │ │ ├─ munkres 1.1.4 [required: any]
│ │ │ │ └─ python 3.11.3 [required: any]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ freetype 2.12.1 [required: >=2.12.1,<3.0a0]
│ │ │ ├─ libpng 1.6.39 [required: >=1.6.39,<1.7.0a0]
│ │ │ │ └─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ └─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ ├─ kiwisolver 1.4.4 [required: >=1.0.1]
│ │ │ ├─ libcxx 16.0.0 [required: >=14.0.4]
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ ├─ numpy 1.24.2 [required: >=1.23.5,<2.0a0]
│ │ │ └─ dependencies of numpy displayed above
│ │ ├─ packaging 23.0 [required: >=20.0]
│ │ │ └─ dependencies of packaging displayed above
│ │ ├─ pillow 9.5.0 [required: >=6.2.0]
│ │ │ ├─ freetype 2.12.1 [required: >=2.12.1,<3.0a0]
│ │ │ │ └─ dependencies of freetype displayed above
│ │ │ ├─ lcms2 2.15 [required: >=2.15,<3.0a0]
│ │ │ │ ├─ libjpeg-turbo 2.1.5.1 [required: >=2.1.5.1,<3.0a0]
│ │ │ │ └─ libtiff 4.5.0 [required: >=4.5.0,<4.6.0a0]
│ │ │ │ ├─ lerc 4.0.0 [required: >=4.0.0,<5.0a0]
│ │ │ │ │ └─ libcxx 16.0.0 [required: >=13.0.1]
│ │ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ │ ├─ libdeflate 1.18 [required: >=1.18,<1.19.0a0]
│ │ │ │ ├─ libjpeg-turbo 2.1.5.1 [required: >=2.1.5.1,<3.0a0]
│ │ │ │ ├─ libwebp-base 1.3.0 [required: >=1.3.0,<2.0a0]
│ │ │ │ ├─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ │ ├─ xz 5.2.6 [required: >=5.2.6,<6.0a0]
│ │ │ │ └─ zstd 1.5.2 [required: >=1.5.2,<1.6.0a0]
│ │ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ │ └─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ ├─ libjpeg-turbo 2.1.5.1 [required: >=2.1.5.1,<3.0a0]
│ │ │ ├─ libtiff 4.5.0 [required: >=4.5.0,<4.6.0a0]
│ │ │ │ └─ dependencies of libtiff displayed above
│ │ │ ├─ libwebp-base 1.3.0 [required: >=1.3.0,<2.0a0]
│ │ │ ├─ libxcb 1.13 [required: >=1.13,<1.14.0a0]
│ │ │ │ ├─ pthread-stubs 0.4 [required: any]
│ │ │ │ ├─ xorg-libxau 1.0.9 [required: any]
│ │ │ │ └─ xorg-libxdmcp 1.1.3 [required: any]
│ │ │ ├─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ ├─ openjpeg 2.5.0 [required: >=2.5.0,<3.0a0]
│ │ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ │ ├─ libpng 1.6.39 [required: >=1.6.39,<1.7.0a0]
│ │ │ │ │ └─ dependencies of libpng displayed above
│ │ │ │ ├─ libtiff 4.5.0 [required: >=4.5.0,<4.6.0a0]
│ │ │ │ │ └─ dependencies of libtiff displayed above
│ │ │ │ └─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ ├─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ └─ tk 8.6.12 [required: >=8.6.12,<8.7.0a0]
│ │ │ └─ dependencies of tk displayed above
│ │ ├─ pyparsing 3.0.9 [required: >=2.3.1]
│ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ python-dateutil 2.8.2 [required: >=2.7]
│ │ │ └─ dependencies of python-dateutil displayed above
│ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ ├─ numpy 1.24.2 [required: any]
│ │ └─ dependencies of numpy displayed above
│ ├─ pandas 2.0.0 [required: any]
│ │ └─ dependencies of pandas displayed above
│ ├─ pyprind 2.11.2 [required: any]
│ │ └─ dependencies of pyprind displayed above
│ ├─ python 3.11.3 [required: >=3.4]
│ │ └─ dependencies of python displayed above
│ ├─ requests 2.28.2 [required: any]
│ │ └─ dependencies of requests displayed above
│ ├─ scipy 1.10.1 [required: any]
│ │ └─ dependencies of scipy displayed above
│ ├─ stats_arrays 0.6.5 [required: any]
│ │ └─ dependencies of stats_arrays displayed above
│ └─ tabulate 0.9.0 [required: any]
│ └─ python 3.11.3 [required: >=3.7]
│ └─ dependencies of python displayed above
├─ bw2calc 2.0.dev12 [required: >=2.0.dev12]
│ └─ dependencies of bw2calc displayed above
├─ bw2data 4.0.dev18 [required: >=4.0.dev18]
│ └─ dependencies of bw2data displayed above
├─ bw2io 0.9.dev14 [required: >=0.9.dev10]
│ ├─ astunparse 1.6.3 [required: >=1.6.1]
│ │ └─ dependencies of astunparse displayed above
│ ├─ bw2calc 2.0.dev12 [required: >=2.0.dev12]
│ │ └─ dependencies of bw2calc displayed above
│ ├─ bw2data 4.0.dev18 [required: >=4.0.dev17]
│ │ └─ dependencies of bw2data displayed above
│ ├─ bw_migrations 0.2 [required: any]
│ │ ├─ bw2data 4.0.dev18 [required: any]
│ │ │ └─ dependencies of bw2data displayed above
│ │ ├─ pandas 2.0.0 [required: any]
│ │ │ └─ dependencies of pandas displayed above
│ │ ├─ python 3.11.3 [required: >=3.7]
│ │ │ └─ dependencies of python displayed above
│ │ └─ stats_arrays 0.6.5 [required: any]
│ │ └─ dependencies of stats_arrays displayed above
│ ├─ bw_processing 0.8.2 [required: any]
│ │ └─ dependencies of bw_processing displayed above
│ ├─ lxml 4.9.2 [required: any]
│ │ └─ dependencies of lxml displayed above
│ ├─ mrio_common_metadata 0.2.1 [required: any]
│ │ ├─ openpyxl 3.1.1 [required: any]
│ │ │ ├─ et_xmlfile 1.1.0 [required: any]
│ │ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ pandas 2.0.0 [required: any]
│ │ │ └─ dependencies of pandas displayed above
│ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ pyxlsb 1.0.10 [required: any]
│ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ scipy 1.10.1 [required: any]
│ │ │ └─ dependencies of scipy displayed above
│ │ └─ xlrd 2.0.1 [required: any]
│ │ └─ python 3.11.3 [required: >=3.6]
│ │ └─ dependencies of python displayed above
│ ├─ numpy 1.24.2 [required: >=1.20]
│ │ └─ dependencies of numpy displayed above
│ ├─ openpyxl 3.1.1 [required: any]
│ │ └─ dependencies of openpyxl displayed above
│ ├─ psutil 5.9.4 [required: any]
│ │ └─ dependencies of psutil displayed above
│ ├─ pyprind 2.11.2 [required: any]
│ │ └─ dependencies of pyprind displayed above
│ ├─ python 3.11.3 [required: >=3.9]
│ │ └─ dependencies of python displayed above
│ ├─ scipy 1.10.1 [required: any]
│ │ └─ dependencies of scipy displayed above
│ ├─ stats_arrays 0.6.5 [required: >=0.6.5]
│ │ └─ dependencies of stats_arrays displayed above
│ ├─ tqdm 4.65.0 [required: any]
│ │ └─ dependencies of tqdm displayed above
│ ├─ unidecode 1.3.6 [required: any]
│ │ └─ python 3.11.3 [required: >=3.5]
│ │ └─ dependencies of python displayed above
│ ├─ voluptuous 0.13.1 [required: any]
│ │ └─ dependencies of voluptuous displayed above
│ ├─ xlrd 2.0.1 [required: any]
│ │ └─ dependencies of xlrd displayed above
│ └─ xlsxwriter 3.0.9 [required: any]
│ └─ python 3.11.3 [required: >=3.6]
│ └─ dependencies of python displayed above
├─ bw_migrations 0.2 [required: any]
│ └─ dependencies of bw_migrations displayed above
├─ bw_processing 0.8.2 [required: >=0.8.2]
│ └─ dependencies of bw_processing displayed above
├─ matrix_utils 0.2.5 [required: >=0.2.5]
│ └─ dependencies of matrix_utils displayed above
├─ mrio_common_metadata 0.2.1 [required: any]
│ └─ dependencies of mrio_common_metadata displayed above
├─ numpy 1.24.2 [required: any]
│ └─ dependencies of numpy displayed above
├─ python 3.11.3 [required: >=3.9]
│ └─ dependencies of python displayed above
└─ stats_arrays 0.6.5 [required: >=0.6.5]
└─ dependencies of stats_arrays displayed above
psutil: make optional (potentially catch errors in functions that call the package)fasteners: remove (as per discussions with @cmutel)pyprind: replace with tqdmappdirs: replace with platformdirsEven after the PR was merged successfully:
peewee does not show up in the Pyodide package list and can't be installed using await piplite.install("peewee").
See also:
requests cannot do https, but using pyodide's open_url does. here's a workaround that can be applied to everywhere requests is used. open_url() returns a StringIO, therefore it needs to be json decoded and is then available. proper fix is likely a wrapper function doing that for us, anyways here the fix for 2nd notebook the "Interfaces" section:
from pyodide.http import open_url
import json
class DenmarkCO2Interface:
size = (1,)
def __next__(self):
# Supposed to work with ISO 8601 but T intervals raise error...
URL = "https://api.energidataservice.dk/dataset/co2emis?start=now-P1D&end=now"
print("Querying energidataservice.dk API")
#result = requests.get(URL).json()['records'][0]['CO2Emission']
result = open_url(URL)
#print(result.getvalue())
data = json.load(result)['records'][0]['CO2Emission']
print(data)
return np.array([data]) / 1000 # g to kg
Running
import micropip
import os
os.environ["BRIGHTWAY_DIR"] = "/tmp/"
await micropip.install('bw2io==0.9.dev23', keep_going = True)
await micropip.install('bw2calc==2.0.dev14', keep_going = True)
await micropip.install('bw2data==4.0.dev28', keep_going = True)
import bw2data
import bw2calc
import bw2io
bw2io.add_example_database(searchable=False)in https://live.brightway.dev/ returns the error:
/lib/python3.11/site-packages/bw_processing/datapackage.py:382, in Datapackage.finalize_serialization(self)
374 self._check_length_consistency()
376 file_writer(
377 data=self.metadata,
378 fs=self.fs,
379 resource="datapackage.json",
380 mimetype="application/json",
381 )
--> 382 self.fs.close()
(...)
File /lib/python3.11/site-packages/fs/osfs.py:511, in OSFS._scandir(self, path, namespaces)
505 info["stat"] = {
506 k: getattr(stat_result, k)
507 for k in dir(stat_result)
508 if k.startswith("st_")
509 }
510 if "access" in namespaces:
--> 511 info["access"] = self._make_access_from_stat(
512 stat_result
513 )
514 if "lstat" in namespaces:
515 lstat_result = dir_entry.stat(follow_symlinks=False)
File /lib/python3.11/site-packages/fs/osfs.py:226, in OSFS._make_access_from_stat(cls, stat_result)
224 access["uid"] = uid = stat_result.st_uid
225 if not _WINDOWS_PLATFORM:
--> 226 import grp
227 import pwd
229 try:
ModuleNotFoundError: The module 'grp' is removed from the Python standard library in the Pyodide distribution due to browser limitations.
See https://pyodide.org/en/stable/usage/loading-packages.html for more details.
File /lib/python3.11/site-packages/bw2io/data/init.py:471, in add_example_database(overwrite, searchable)
469 importer.apply_strategies()
470 importer.match_database(fields=["name"])
--> 471 importer.write_database(activate_parameters=True, searchable=searchable)
473 group = "Mobility exchanges"
474 Group.delete().where(Group.name == group).execute()
File /lib/python3.11/site-packages/bw2io/importers/excel.py:282, in ExcelImporter.write_database(self, **kwargs)
280 """Same as base write_database method, but activate_parameters is True by default."""
281 kwargs["activate_parameters"] = kwargs.get("activate_parameters", True)
--> 282 super(ExcelImporter, self).write_database(**kwargs)
File /lib/python3.11/site-packages/bw2io/importers/base_lci.py:273, in LCIImporter.write_database(self, data, delete_existing, backend, activate_parameters, db_name, searchable, **kwargs)
271 warnings.simplefilter("ignore")
272 db = Database(db_name, backend=backend)
--> 273 db.register(**self.metadata)
275 self.write_database_parameters(activate_parameters, delete_existing)
277 existing.update(data)
File /lib/python3.11/site-packages/bw2data/backends/base.py:220, in SQLiteBackend.register(self, write_empty, **kwargs)
218 super().register(**kwargs)
219 if write_empty:
--> 220 self.write({}, searchable=False)
File /lib/python3.11/site-packages/bw2data/project.py:432, in writable_project(wrapped, instance, args, kwargs)
429 @wrapt.decorator
430 def writable_project(wrapped, instance, args, kwargs):
431 warnings.warn("writable_project is obsolete and does nothing", DeprecationWarning)
--> 432 return wrapped(*args, **kwargs)
File /lib/python3.11/site-packages/bw2data/backends/base.py:535, in SQLiteBackend.write(self, data, process, searchable)
532 self.make_searchable(reset=True)
534 if process:
--> 535 self.process()
File /lib/python3.11/site-packages/bw2data/backends/base.py:826, in SQLiteBackend.process(self, csv)
813 df = pandas.DataFrame([get_csv_data_dict(ds) for ds in self])
814 dp.add_csv_metadata(
815 dataframe=df,
816 valid_for=[
(...)
823 name=clean_datapackage_name(self.name + " activity metadata"),
824 )
--> 826 dp.finalize_serialization()
828 self.metadata["depends"] = sorted(dependents)
829 self.metadata["dirty"] = False
File /lib/python3.11/site-packages/bw_processing/datapackage.py:382, in Datapackage.finalize_serialization(self)
374 self._check_length_consistency()
376 file_writer(
377 data=self.metadata,
378 fs=self.fs,
379 resource="datapackage.json",
380 mimetype="application/json",
381 )
--> 382 self.fs.close()
File /lib/python3.11/site-packages/fs/zipfs.py:297, in WriteZipFS.close(self)
295 if not self.isclosed():
296 try:
--> 297 self.write_zip()
298 finally:
299 self._temp_fs.close()
File /lib/python3.11/site-packages/fs/zipfs.py:325, in WriteZipFS.write_zip(self, file, compression, encoding)
309 """Write zip to a file.
310
311 Arguments:
(...)
322
323 """
324 if not self.isclosed():
--> 325 write_zip(
326 self._temp_fs,
327 file or self._file,
328 compression=compression or self.compression,
329 encoding=encoding or self.encoding,
330 )
File /lib/python3.11/site-packages/fs/compress.py:60, in write_zip(src_fs, file, compression, encoding, walker)
58 with _zip:
59 gen_walk = walker.info(src_fs, namespaces=["details", "stat", "access"])
---> 60 for path, info in gen_walk:
61 # Zip names must be relative, directory names must end
62 # with a slash.
63 zip_name = relpath(path + "/" if info.is_dir else path)
64 if not six.PY3:
65 # Python2 expects bytes filenames
File /lib/python3.11/site-packages/fs/walk.py:400, in Walker.info(self, fs, path, namespaces)
398 _combine = combine
399 _walk = self._iter_walk(fs, path=path, namespaces=namespaces)
--> 400 for _path, info in _walk:
401 if info is not None:
402 yield _combine(_path, info.name), info
File /lib/python3.11/site-packages/fs/walk.py:427, in Walker._walk_breadth(self, fs, path, namespaces)
425 while queue:
426 dir_path = pop()
--> 427 for info in _scan(fs, dir_path, namespaces=namespaces):
428 if info.is_dir:
429 _depth = _calculate_depth(dir_path) - depth + 1
File /lib/python3.11/site-packages/fs/walk.py:287, in Walker._scan(self, fs, dir_path, namespaces)
273 """Get an iterator of Info objects for a directory path.
274
275 Arguments:
(...)
284
285 """
286 try:
--> 287 for info in fs.scandir(dir_path, namespaces=namespaces):
288 yield info
289 except FSError as error:
File /lib/python3.11/site-packages/fs/osfs.py:511, in OSFS.scandir(self, path, namespaces)
505 info["stat"] = {
506 k: getattr(stat_result, k)
507 for k in dir(stat_result)
508 if k.startswith("st")
509 }
510 if "access" in namespaces:
--> 511 info["access"] = self._make_access_from_stat(
512 stat_result
513 )
514 if "lstat" in namespaces:
515 lstat_result = dir_entry.stat(follow_symlinks=False)
File /lib/python3.11/site-packages/fs/osfs.py:226, in OSFS._make_access_from_stat(cls, stat_result)
224 access["uid"] = uid = stat_result.st_uid
225 if not _WINDOWS_PLATFORM:
--> 226 import grp
227 import pwd
229 try:
ModuleNotFoundError: The module 'grp' is removed from the Python standard library in the Pyodide distribution due to browser limitations.
See https://pyodide.org/en/stable/usage/loading-packages.html for more details.
</details>
The build currently fails with:
- nothing provides psutil needed by bw2io-0.9.dev18-py_0
even though the legacy dependency psutil has been removed from bw2io. The lastest version has been added to the cmutel channel on Anaconda.
emscripten-forgeemscripten-forge/recipes/arrow-python
pyodideYeah, I'm waiting on that pr (apache/arrow#35672) in arrow to get reviewed and in. Once that's in the build recipe for pyodide is trivial.
...why is this workflow being run?
error libmamba Could not solve for environment specs
The following packages are incompatible
├─ bw2data 4.0.dev21** is uninstallable because it requires
│ └─ requests >=1.1.0 but there are no viable options
│ ├─ requests [2.23.0|2.24.0|...|2.29.0] would require
│ │ └─ urllib3 [>=1.21.1,<1.26,!=1.25.0,!=1.25.1 |>=1.21.1,<1.27 ] but there are no viable options
│ │ ├─ urllib3 [1.24.3|2.0.0|2.0.1|2.0.2|2.0.3] would require
│ │ │ └─ pysocks >=1.5.6,<2.0,!=1.5.7 but there are no viable options
│ │ │ ├─ pysocks 1.7.1 would require
│ │ │ │ └─ __win , which is missing on the system;
│ │ │ └─ pysocks 1.7.1 would require
│ │ │ └─ __unix , which is missing on the system;
│ │ └─ urllib3 [1.25.10|1.25.11|...|1.26.9] would require
│ │ └─ brotlipy >=0.6.0 , which does not exist (perhaps a missing channel);
│ └─ requests 2.31.0 would require
│ └─ urllib3 >=1.21.1,<3 but there are no viable options
│ ├─ urllib3 [1.24.3|2.0.0|2.0.1|2.0.2|2.0.3], which cannot be installed (as previously explained);
│ ├─ urllib3 [1.25.10|1.25.11|...|1.26.9], which cannot be installed (as previously explained);
│ └─ urllib3 [2.0.3|2.0.4] would require
│ └─ brotli-python >=1.0.9 , which does not exist (perhaps a missing channel);
└─ bw2io 0.9.dev21** is uninstallable because it requires
└─ bw2data >=3.5.1 but there are no viable options
├─ bw2data 4.0.dev21, which cannot be installed (as previously explained);
└─ bw2data [3.6.5|3.6.6] would require
└─ psutil , which does not exist (perhaps a missing channel).
Related discussion:
The simple test I added during the bw2calc build:
=================================== FAILURES ===================================
_____________________________ test_import_bw2calc ______________________________
def test_import_bw2calc():
> import bw2calc
test_import_bw2calc.py:2:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/lib/python3.10/site-packages/bw2calc/__init__.py:52: in <module>
from .dense_lca import DenseLCA
/lib/python3.10/site-packages/bw2calc/dense_lca.py:3: in <module>
from .lca import LCA
/lib/python3.10/site-packages/bw2calc/lca.py:10: in <module>
import bw_processing as bwp
/lib/python3.10/site-packages/bw_processing/__init__.py:48: in <module>
__version__ = get_version_tuple()
I confirmed that the latest version of bw_processing and the bw_parameters.utils.get_version_tuple() function work fine on their own.
Adding new packages to a Pyodide kernel involves:
(JupyterLite) "Use additional Python packages"
(Pyodide) "Loading packages"
For instance,
%pip install -q bw2io
throws the error
ValueError: Can't find a pure Python 3 wheel for 'psutil'.
See: https://pyodide.org/en/stable/usage/faq.html#micropip-can-t-find-a-pure-python-wheel
You can use `micropip.install(..., keep_going=True)`to get a list of all packages with missing wheels.
This was briefly discussed in 2022 with the Pyodide team in pyodide/pyodide#3056:
psutilwon't be very useful on Pyodide. Emscripten platform does not support any process, resource, signals, or similar POSIX APIs. Browsers are also sandboxed. You won't be able to see or modify any processes on the host system.
A complete list of all dependencies of the Brightway ecosystem must therefore be compiled.
bw2io (and their pyodide/emscripten-forge status)bw2data (and their pyodide/emscripten-forge status)bw2calc (and their pyodide/emscripten-forge status)bw2analyzer (and their pyodide/emscripten-forge status)As per the documentation, a BRIGHTWAY_DIR environment variable must be set to set the primary data directory of Brightway.
This is necessary, since sqlite3 connections in JupyterLite currently don't work in the default directory:
Trying to import bw2io, bw2data or bw2calc using the xeus-python-kernel-based JupyterLite version with these packages, I get the error:
---------------------------------------------------------------------------
FileNotFoundError Traceback (most recent call last)
Cell In[6], line 1
----> 1 import bw2data as bd
File /lib/python3.10/site-packages/bw2data/__init__.py:81
78 mapping = Mapping()
80 from .updates import Updates
---> 81 from .parameters import parameters
83 Updates.check_status()
File /lib/python3.10/site-packages/bw2data/parameters.py:8
6 import asteval
7 from asteval import Interpreter
----> 8 from bw2parameters import ParameterSet
9 from bw2parameters.errors import MissingName
10 from peewee import (
11 BooleanField,
12 Check,
(...)
17 TextField,
18 )
File /lib/python3.10/site-packages/bw2parameters/__init__.py:17
1 __all__ = (
2 "__version__",
3 "FormulaSubstitutor",
(...)
12 "substitute_in_formulas",
13 )
16 from .errors import MissingName
---> 17 from .interpreter import Interpreter, PintInterpreter
18 from .mangling import (
19 FormulaSubstitutor,
20 mangle_formula,
21 prefix_parameter_dict,
22 substitute_in_formulas,
23 )
24 from .parameter_set import ParameterSet, PintParameterSet
File /lib/python3.10/site-packages/bw2parameters/interpreter.py:9
6 from asteval import NameFinder
8 from .errors import MissingName
----> 9 from .pint import PintWrapper
12 class Interpreter(ASTInterpreter):
13 def __init__(self, *args, **kwargs):
File /lib/python3.10/site-packages/bw2parameters/pint.py:80
76 else:
77 return self.Quantity(value=amount, units=unit)
---> 80 PintWrapper = PintWrapperSingleton()
File /lib/python3.10/site-packages/bw2parameters/pint.py:17, in PintWrapperSingleton.__init__(self)
15 if not hasattr(self, "string_preprocessor"):
16 self.string_preprocessor = string_preprocessor
---> 17 self.ureg = UnitRegistry()
18 self.Quantity = self.ureg.Quantity
19 self.Unit = self.ureg.Unit
File /lib/python3.10/site-packages/pint/facets/plain/registry.py:138, in RegistryMeta.__call__(self, *args, **kwargs)
136 def __call__(self, *args, **kwargs):
137 obj = super().__call__(*args, **kwargs)
--> 138 obj._after_init()
139 return obj
File /lib/python3.10/site-packages/pint/facets/system/registry.py:78, in GenericSystemRegistry._after_init(self)
72 def _after_init(self) -> None:
73 """Invoked at the end of ``__init__``.
74
75 - Create default group and add all orphan units to it
76 - Set default system
77 """
---> 78 super()._after_init()
80 #: System name to be used by default.
81 self._default_system_name = self._default_system_name or self._defaults.get(
82 "system", None
83 )
File /lib/python3.10/site-packages/pint/facets/group/registry.py:64, in GenericGroupRegistry._after_init(self)
58 def _after_init(self) -> None:
59 """Invoked at the end of ``__init__``.
60
61 - Create default group and add all orphan units to it
62 - Set default system
63 """
---> 64 super()._after_init()
66 #: Copy units not defined in any group to the default group
67 if "group" in self._defaults:
File /lib/python3.10/site-packages/pint/facets/plain/registry.py:307, in GenericPlainRegistry._after_init(self)
305 if self._filename == "":
306 path = pathlib.Path(__file__).parent.parent.parent / "default_en.txt"
--> 307 loaded_files = self.load_definitions(path, True)
308 elif self._filename is not None:
309 loaded_files = self.load_definitions(self._filename)
File /lib/python3.10/site-packages/pint/facets/plain/registry.py:550, in GenericPlainRegistry.load_definitions(self, file, is_resource)
548 parsed_project = self._def_parser.parse_string("\n".join(file))
549 else:
--> 550 parsed_project = self._def_parser.parse_file(file)
552 for definition in self._def_parser.iter_parsed_project(parsed_project):
553 self._helper_dispatch_adder(definition)
File /lib/python3.10/site-packages/pint/delegates/txt_defparser/defparser.py:137, in DefParser.parse_file(self, filename, cfg)
134 def parse_file(
135 self, filename: Union[pathlib.Path, str], cfg: Optional[ParserConfig] = None
136 ):
--> 137 return fp.parse(
138 filename,
139 _PintParser,
140 cfg or self._default_config,
141 diskcache=self._diskcache,
142 )
File /lib/python3.10/site-packages/pint/_vendor/flexparser.py:1393, in parse(entry_point, spec, config, strip_spaces, delimiters, locator, prefer_resource_as_file, **extra_parser_kwargs)
1385 elif not (isinstance(entry_point, tuple) and len(entry_point) == 2):
1386 raise TypeError(
1387 f"Cannot handle type {type(entry_point)}, "
1388 "use str or pathlib.Path for files or "
1389 "(package: str, resource_name: str) tuple "
1390 "for a resource."
1391 )
-> 1393 pp[None] = parsed = parser.parse(entry_point)
1394 pending.extend(
1395 (parsed.location, el.target)
1396 for el in parsed.parsed_source.filter_by(IncludeStatement)
1397 )
1399 while pending:
File /lib/python3.10/site-packages/pint/_vendor/flexparser.py:1010, in Parser.parse(self, source_location)
1007 return self.parse_file(pathlib.Path(source_location))
1009 if isinstance(source_location, pathlib.Path):
-> 1010 return self.parse_file(source_location)
1012 raise TypeError(
1013 f"Unknown type {type(source_location)}, "
1014 "use str or pathlib.Path for files or "
1015 "(package: str, resource_name: str) tuple "
1016 "for a resource."
1017 )
File /lib/python3.10/site-packages/pint/delegates/txt_defparser/defparser.py:77, in _PintParser.parse_file(self, path)
75 def parse_file(self, path: pathlib.Path) -> PintSource:
76 if self._diskcache is None:
---> 77 return super().parse_file(path)
78 content, basename = self._diskcache.load(path, super().parse_file)
79 return content
File /lib/python3.10/site-packages/pint/_vendor/flexparser.py:1042, in Parser.parse_file(self, path)
1034 def parse_file(self, path: pathlib.Path) -> ParsedSource[RBT, CT]:
1035 """Parse a file into a ParsedSourceFile.
1036
1037 Parameters
(...)
1040 path of the file.
1041 """
-> 1042 with path.open(mode="rb") as fi:
1043 content = fi.read()
1045 bos = BOF(
1046 Hash.from_bytes(self._hasher, content), path, path.stat().st_mtime
1047 ).set_simple_position(0, 0, 0)
File /lib/python3.10/pathlib.py:1117, in Path.open(self, mode, buffering, encoding, errors, newline)
1115 if "b" not in mode:
1116 encoding = io.text_encoding(encoding)
-> 1117 return self._accessor.open(self, mode, buffering, encoding, errors,
1118 newline)
FileNotFoundError: [Errno 44] No such file or directory: '/lib/python3.10/site-packages/pint/default_en.txt'
Set up a custom XEUS-Python kernel for Jupyter Lite using:
...check: jupyterlite/jupyterlite#1250 (comment)
Currently, requests is being used. There is no support in Pyodide
This should use the code provided in (and will close):
Could (potentially) be mitigated through:
See also:
My naive attempts to upgrade the build environment build-environment.yml was unsuccessful. I was able to narrow down the issue to the upgrade of the xeus-python-kernel package:
This includes:
| package | pure 🐍? | issue | solution |
|---|---|---|---|
| lxml | no | not pure 🐍 | build for web assembly |
| numpy | no | none | |
| openpyxl | yes | none | |
| psutil | no | won't work in sandboxed WASM env | add option in code to ignore calls to this package |
| pyprind | yes | none | |
| requests | yes | none | |
| scipy | no | none | |
| tqdm | yes | none | |
| unidecode | yes | none | |
| voluptuous | yes | none | |
| xlrd | yes | none | |
| xlsxwriter | yes | none | |
| peewee | no | not pure 🐍 | build for web assembly |
| woosh | yes | none | |
| wrapt | yes | none | |
| fasteners | yes | likely won't work | remove as per discussion with @cmutel |
| docopt | no | not pure 🐍 | replace with pure-python docopt-ng |
| appdirs | yes | package deprecated | replace with platformdirs |
| fs | yes | none | |
| matplotlib | no | none | |
| tabulate | yes | none |
conda-tree depends -t brightway2_nosolver
brightway25_nosolver==1.0.6
├─ bw2analyzer 0.11.4 [required: >=0.11.4]
│ ├─ bw2calc 2.0.dev12 [required: any]
│ │ ├─ bw_processing 0.8.2 [required: >=0.8]
│ │ │ ├─ fs 2.4.15 [required: any]
│ │ │ │ ├─ appdirs 1.4.4 [required: >=1.4.3,<2]
│ │ │ │ │ └─ python 3.11.3 [required: any]
│ │ │ │ │ ├─ bzip2 1.0.8 [required: >=1.0.8,<2.0a0]
│ │ │ │ │ ├─ libexpat 2.5.0 [required: >=2.5.0,<3.0a0]
│ │ │ │ │ ├─ libffi 3.4.2 [required: >=3.4,<4.0a0]
│ │ │ │ │ ├─ libsqlite 3.40.0 [required: >=3.40.0,<4.0a0]
│ │ │ │ │ │ └─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ │ │ ├─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ │ │ ├─ ncurses 6.3 [required: >=6.3,<7.0a0]
│ │ │ │ │ ├─ openssl 3.1.0 [required: >=3.1.0,<4.0a0]
│ │ │ │ │ │ └─ ca-certificates 2022.12.7 [required: any]
│ │ │ │ │ ├─ readline 8.2 [required: >=8.2,<9.0a0]
│ │ │ │ │ │ └─ ncurses 6.3 [required: >=6.3,<7.0a0]
│ │ │ │ │ ├─ tk 8.6.12 [required: >=8.6.12,<8.7.0a0]
│ │ │ │ │ │ └─ libzlib 1.2.13 [required: >=1.2.11,<1.3.0a0]
│ │ │ │ │ ├─ tzdata 2023c [required: any]
│ │ │ │ │ ├─ xz 5.2.6 [required: >=5.2.6,<6.0a0]
│ │ │ │ │ └─ pip 23.0.1 [required: any]
│ │ │ │ │ ├─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ setuptools 67.6.1 [required: any]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ └─ wheel 0.40.0 [required: any]
│ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ pytz 2023.3 [required: any]
│ │ │ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ setuptools 67.6.1 [required: any]
│ │ │ │ │ └─ dependencies of setuptools displayed above
│ │ │ │ └─ six 1.16.0 [required: >=1.10.0,<2]
│ │ │ │ └─ python 3.11.3 [required: any]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ ├─ numpy 1.24.2 [required: any]
│ │ │ │ ├─ libblas 3.9.0 [required: >=3.9.0,<4.0a0]
│ │ │ │ │ └─ libopenblas 0.3.21 [required: >=0.3.21,<1.0a0]
│ │ │ │ │ ├─ libgfortran 5.0.0 [required: 5.*]
│ │ │ │ │ │ └─ libgfortran5 12.2.0 [required: any]
│ │ │ │ │ │ └─ llvm-openmp 16.0.0 [required: >=8.0.0]
│ │ │ │ │ ├─ libgfortran5 12.2.0 [required: >=11.3.0]
│ │ │ │ │ │ └─ dependencies of libgfortran5 displayed above
│ │ │ │ │ └─ llvm-openmp 16.0.0 [required: >=14.0.4]
│ │ │ │ ├─ libcblas 3.9.0 [required: >=3.9.0,<4.0a0]
│ │ │ │ │ └─ libblas 3.9.0 [required: 3.9.0, 16_osxarm64_openblas]
│ │ │ │ │ └─ dependencies of libblas displayed above
│ │ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ │ ├─ liblapack 3.9.0 [required: >=3.9.0,<4.0a0]
│ │ │ │ │ └─ libblas 3.9.0 [required: 3.9.0, 16_osxarm64_openblas]
│ │ │ │ │ └─ dependencies of libblas displayed above
│ │ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ ├─ pandas 2.0.0 [required: any]
│ │ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ │ ├─ numpy 1.24.2 [required: >=1.23.5,<2.0a0]
│ │ │ │ │ └─ dependencies of numpy displayed above
│ │ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ python-dateutil 2.8.2 [required: >=2.8.1]
│ │ │ │ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ └─ six 1.16.0 [required: >=1.5]
│ │ │ │ │ └─ dependencies of six displayed above
│ │ │ │ ├─ python-tzdata 2023.3 [required: >=2022a]
│ │ │ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ │ └─ pytz 2023.3 [required: >=2020.1]
│ │ │ │ └─ dependencies of pytz displayed above
│ │ │ └─ python 3.11.3 [required: >=3.5]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ matrix_utils 0.2.5 [required: >=0.2.5]
│ │ │ ├─ bw_processing 0.8.2 [required: >=0.8]
│ │ │ │ └─ dependencies of bw_processing displayed above
│ │ │ ├─ numpy 1.24.2 [required: any]
│ │ │ │ └─ dependencies of numpy displayed above
│ │ │ ├─ pandas 2.0.0 [required: any]
│ │ │ │ └─ dependencies of pandas displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ ├─ scipy 1.10.1 [required: any]
│ │ │ │ ├─ libblas 3.9.0 [required: >=3.9.0,<4.0a0]
│ │ │ │ │ └─ dependencies of libblas displayed above
│ │ │ │ ├─ libcblas 3.9.0 [required: >=3.9.0,<4.0a0]
│ │ │ │ │ └─ dependencies of libcblas displayed above
│ │ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ │ ├─ libgfortran 5.0.0 [required: 5.*]
│ │ │ │ │ └─ dependencies of libgfortran displayed above
│ │ │ │ ├─ libgfortran5 12.2.0 [required: >=11.3.0]
│ │ │ │ │ └─ dependencies of libgfortran5 displayed above
│ │ │ │ ├─ liblapack 3.9.0 [required: >=3.9.0,<4.0a0]
│ │ │ │ │ └─ dependencies of liblapack displayed above
│ │ │ │ ├─ numpy 1.24.2 [required: >=1.23.5,<2.0a0]
│ │ │ │ │ └─ dependencies of numpy displayed above
│ │ │ │ ├─ pooch 1.7.0 [required: any]
│ │ │ │ │ ├─ packaging 23.0 [required: >=20.0]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ platformdirs 3.2.0 [required: >=2.5.0]
│ │ │ │ │ │ ├─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ │ └─ typing-extensions 4.5.0 [required: >=4.5]
│ │ │ │ │ │ └─ typing_extensions 4.5.0 [required: 4.5.0, pyha770c72_0]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ └─ requests 2.28.2 [required: >=2.19.0]
│ │ │ │ │ ├─ certifi 2022.12.7 [required: >=2017.4.17]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ charset-normalizer 3.1.0 [required: >=2,<4]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ idna 3.4 [required: >=2.5,<4]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ python 3.11.3 [required: >=3.7,<4.0]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ └─ urllib3 1.26.15 [required: >=1.21.1,<1.27]
│ │ │ │ │ ├─ brotlipy 0.7.0 [required: >=0.6.0]
│ │ │ │ │ │ ├─ cffi 1.15.1 [required: >=1.0.0]
│ │ │ │ │ │ │ ├─ libffi 3.4.2 [required: >=3.4,<4.0a0]
│ │ │ │ │ │ │ ├─ pycparser 2.21 [required: any]
│ │ │ │ │ │ │ │ └─ python 3.11.3 [required: ==2.7.*|>=3.4]
│ │ │ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ │ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ │ │ ├─ certifi 2022.12.7 [required: any]
│ │ │ │ │ │ └─ dependencies of certifi displayed above
│ │ │ │ │ ├─ cryptography 40.0.1 [required: >=1.3.4]
│ │ │ │ │ │ ├─ cffi 1.15.1 [required: >=1.12]
│ │ │ │ │ │ │ └─ dependencies of cffi displayed above
│ │ │ │ │ │ ├─ openssl 3.1.0 [required: >=3.1.0,<4.0a0]
│ │ │ │ │ │ │ └─ dependencies of openssl displayed above
│ │ │ │ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ │ │ ├─ idna 3.4 [required: >=2.0.0]
│ │ │ │ │ │ └─ dependencies of idna displayed above
│ │ │ │ │ ├─ pyopenssl 23.1.1 [required: >=0.14]
│ │ │ │ │ │ ├─ cryptography 40.0.1 [required: >=38.0.0,<41]
│ │ │ │ │ │ │ └─ dependencies of cryptography displayed above
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ ├─ pysocks 1.7.1 [required: >=1.5.6,<2.0,!=1.5.7]
│ │ │ │ │ │ ├─ __unix [required: any]
│ │ │ │ │ │ └─ python 3.11.3 [required: >=3.8]
│ │ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ │ └─ python 3.11.3 [required: <4.0]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ └─ stats_arrays 0.6.5 [required: any]
│ │ │ ├─ numpy 1.24.2 [required: any]
│ │ │ │ └─ dependencies of numpy displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ scipy 1.10.1 [required: any]
│ │ │ └─ dependencies of scipy displayed above
│ │ ├─ numpy 1.24.2 [required: >=1.20]
│ │ │ └─ dependencies of numpy displayed above
│ │ ├─ python 3.11.3 [required: any]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ scipy 1.10.1 [required: any]
│ │ │ └─ dependencies of scipy displayed above
│ │ ├─ setuptools 67.6.1 [required: any]
│ │ │ └─ dependencies of setuptools displayed above
│ │ └─ stats_arrays 0.6.5 [required: any]
│ │ └─ dependencies of stats_arrays displayed above
│ ├─ bw2data 4.0.dev18 [required: any]
│ │ ├─ appdirs 1.4.4 [required: >=1.4.4]
│ │ │ └─ dependencies of appdirs displayed above
│ │ ├─ bw2parameters 0.7 [required: >=0.6.6]
│ │ │ ├─ asteval 0.9.29 [required: any]
│ │ │ │ ├─ numpy 1.24.2 [required: >=1.12]
│ │ │ │ │ └─ dependencies of numpy displayed above
│ │ │ │ ├─ pip 23.0.1 [required: any]
│ │ │ │ │ └─ dependencies of pip displayed above
│ │ │ │ ├─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ └─ setuptools-scm 7.1.0 [required: any]
│ │ │ │ ├─ packaging 23.0 [required: >=20.0]
│ │ │ │ │ └─ dependencies of packaging displayed above
│ │ │ │ ├─ python 3.11.3 [required: >=3.8]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ ├─ setuptools 67.6.1 [required: >=45]
│ │ │ │ │ └─ dependencies of setuptools displayed above
│ │ │ │ ├─ tomli 2.0.1 [required: >=1.0.0]
│ │ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ └─ typing-extensions 4.5.0 [required: any]
│ │ │ │ └─ dependencies of typing-extensions displayed above
│ │ │ ├─ astunparse 1.6.3 [required: any]
│ │ │ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ │ │ └─ dependencies of python displayed above
│ │ │ │ └─ six 1.16.0 [required: >=1.6.1,<2.0]
│ │ │ │ └─ dependencies of six displayed above
│ │ │ ├─ numpy 1.24.2 [required: any]
│ │ │ │ └─ dependencies of numpy displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ stats_arrays 0.6.5 [required: any]
│ │ │ └─ dependencies of stats_arrays displayed above
│ │ ├─ bw_processing 0.8.2 [required: >=0.8]
│ │ │ └─ dependencies of bw_processing displayed above
│ │ ├─ docopt 0.6.2 [required: >=0.6.2]
│ │ │ └─ python 3.11.3 [required: any]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ fasteners 0.17.3 [required: >=0.14.1]
│ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ lxml 4.9.2 [required: >=4.6]
│ │ │ ├─ libxml2 2.10.3 [required: >=2.10.3,<2.11.0a0]
│ │ │ │ ├─ icu 72.1 [required: >=72.1,<73.0a0]
│ │ │ │ ├─ libiconv 1.17 [required: >=1.17,<2.0a0]
│ │ │ │ ├─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ │ └─ xz 5.2.6 [required: >=5.2.6,<6.0a0]
│ │ │ ├─ libxslt 1.1.37 [required: >=1.1.37,<2.0a0]
│ │ │ │ └─ libxml2 2.10.3 [required: >=2.10.3,<2.11.0a0]
│ │ │ │ └─ dependencies of libxml2 displayed above
│ │ │ ├─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ numpy 1.24.2 [required: >=1.20]
│ │ │ └─ dependencies of numpy displayed above
│ │ ├─ peewee 3.16.0 [required: >=3.14.4]
│ │ │ ├─ libsqlite 3.40.0 [required: >=3.40.0,<4.0a0]
│ │ │ │ └─ dependencies of libsqlite displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ psutil 5.9.4 [required: >=5.8]
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ pyprind 2.11.2 [required: >=2.11]
│ │ │ ├─ psutil 5.9.4 [required: >=3.2.0]
│ │ │ │ └─ dependencies of psutil displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ python 3.11.3 [required: >=3.9]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ requests 2.28.2 [required: >=2.25]
│ │ │ └─ dependencies of requests displayed above
│ │ ├─ scipy 1.10.1 [required: >=1.6]
│ │ │ └─ dependencies of scipy displayed above
│ │ ├─ stats_arrays 0.6.5 [required: >=0.6.5]
│ │ │ └─ dependencies of stats_arrays displayed above
│ │ ├─ tqdm 4.65.0 [required: any]
│ │ │ ├─ colorama 0.4.6 [required: any]
│ │ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python 3.11.3 [required: >=3.7]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ voluptuous 0.13.1 [required: >=0.12]
│ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ whoosh 2.7.4 [required: any]
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ └─ wrapt 1.15.0 [required: >=1.12]
│ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ └─ dependencies of python displayed above
│ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ ├─ matplotlib-base 3.7.1 [required: any]
│ │ ├─ certifi 2022.12.7 [required: >=2020.06.20]
│ │ │ └─ dependencies of certifi displayed above
│ │ ├─ contourpy 1.0.7 [required: >=1.0.1]
│ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ ├─ numpy 1.24.2 [required: >=1.16]
│ │ │ │ └─ dependencies of numpy displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ cycler 0.11.0 [required: >=0.10]
│ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ fonttools 4.39.3 [required: >=4.22.0]
│ │ │ ├─ brotli 1.0.9 [required: any]
│ │ │ │ ├─ brotli-bin 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ │ ├─ libbrotlidec 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ │ │ └─ libbrotlicommon 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ │ └─ libbrotlienc 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ │ └─ libbrotlicommon 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ ├─ libbrotlidec 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ │ └─ dependencies of libbrotlidec displayed above
│ │ │ │ └─ libbrotlienc 1.0.9 [required: 1.0.9, h1a8c8d9_8]
│ │ │ │ └─ dependencies of libbrotlienc displayed above
│ │ │ ├─ munkres 1.1.4 [required: any]
│ │ │ │ └─ python 3.11.3 [required: any]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ freetype 2.12.1 [required: >=2.12.1,<3.0a0]
│ │ │ ├─ libpng 1.6.39 [required: >=1.6.39,<1.7.0a0]
│ │ │ │ └─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ └─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ ├─ kiwisolver 1.4.4 [required: >=1.0.1]
│ │ │ ├─ libcxx 16.0.0 [required: >=14.0.4]
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ ├─ numpy 1.24.2 [required: >=1.23.5,<2.0a0]
│ │ │ └─ dependencies of numpy displayed above
│ │ ├─ packaging 23.0 [required: >=20.0]
│ │ │ └─ dependencies of packaging displayed above
│ │ ├─ pillow 9.5.0 [required: >=6.2.0]
│ │ │ ├─ freetype 2.12.1 [required: >=2.12.1,<3.0a0]
│ │ │ │ └─ dependencies of freetype displayed above
│ │ │ ├─ lcms2 2.15 [required: >=2.15,<3.0a0]
│ │ │ │ ├─ libjpeg-turbo 2.1.5.1 [required: >=2.1.5.1,<3.0a0]
│ │ │ │ └─ libtiff 4.5.0 [required: >=4.5.0,<4.6.0a0]
│ │ │ │ ├─ lerc 4.0.0 [required: >=4.0.0,<5.0a0]
│ │ │ │ │ └─ libcxx 16.0.0 [required: >=13.0.1]
│ │ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ │ ├─ libdeflate 1.18 [required: >=1.18,<1.19.0a0]
│ │ │ │ ├─ libjpeg-turbo 2.1.5.1 [required: >=2.1.5.1,<3.0a0]
│ │ │ │ ├─ libwebp-base 1.3.0 [required: >=1.3.0,<2.0a0]
│ │ │ │ ├─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ │ ├─ xz 5.2.6 [required: >=5.2.6,<6.0a0]
│ │ │ │ └─ zstd 1.5.2 [required: >=1.5.2,<1.6.0a0]
│ │ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ │ └─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ ├─ libjpeg-turbo 2.1.5.1 [required: >=2.1.5.1,<3.0a0]
│ │ │ ├─ libtiff 4.5.0 [required: >=4.5.0,<4.6.0a0]
│ │ │ │ └─ dependencies of libtiff displayed above
│ │ │ ├─ libwebp-base 1.3.0 [required: >=1.3.0,<2.0a0]
│ │ │ ├─ libxcb 1.13 [required: >=1.13,<1.14.0a0]
│ │ │ │ ├─ pthread-stubs 0.4 [required: any]
│ │ │ │ ├─ xorg-libxau 1.0.9 [required: any]
│ │ │ │ └─ xorg-libxdmcp 1.1.3 [required: any]
│ │ │ ├─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ ├─ openjpeg 2.5.0 [required: >=2.5.0,<3.0a0]
│ │ │ │ ├─ libcxx 16.0.0 [required: >=14.0.6]
│ │ │ │ ├─ libpng 1.6.39 [required: >=1.6.39,<1.7.0a0]
│ │ │ │ │ └─ dependencies of libpng displayed above
│ │ │ │ ├─ libtiff 4.5.0 [required: >=4.5.0,<4.6.0a0]
│ │ │ │ │ └─ dependencies of libtiff displayed above
│ │ │ │ └─ libzlib 1.2.13 [required: >=1.2.13,<1.3.0a0]
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ ├─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ │ └─ tk 8.6.12 [required: >=8.6.12,<8.7.0a0]
│ │ │ └─ dependencies of tk displayed above
│ │ ├─ pyparsing 3.0.9 [required: >=2.3.1]
│ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ python-dateutil 2.8.2 [required: >=2.7]
│ │ │ └─ dependencies of python-dateutil displayed above
│ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ ├─ numpy 1.24.2 [required: any]
│ │ └─ dependencies of numpy displayed above
│ ├─ pandas 2.0.0 [required: any]
│ │ └─ dependencies of pandas displayed above
│ ├─ pyprind 2.11.2 [required: any]
│ │ └─ dependencies of pyprind displayed above
│ ├─ python 3.11.3 [required: >=3.4]
│ │ └─ dependencies of python displayed above
│ ├─ requests 2.28.2 [required: any]
│ │ └─ dependencies of requests displayed above
│ ├─ scipy 1.10.1 [required: any]
│ │ └─ dependencies of scipy displayed above
│ ├─ stats_arrays 0.6.5 [required: any]
│ │ └─ dependencies of stats_arrays displayed above
│ └─ tabulate 0.9.0 [required: any]
│ └─ python 3.11.3 [required: >=3.7]
│ └─ dependencies of python displayed above
├─ bw2calc 2.0.dev12 [required: >=2.0.dev12]
│ └─ dependencies of bw2calc displayed above
├─ bw2data 4.0.dev18 [required: >=4.0.dev18]
│ └─ dependencies of bw2data displayed above
├─ bw2io 0.9.dev14 [required: >=0.9.dev10]
│ ├─ astunparse 1.6.3 [required: >=1.6.1]
│ │ └─ dependencies of astunparse displayed above
│ ├─ bw2calc 2.0.dev12 [required: >=2.0.dev12]
│ │ └─ dependencies of bw2calc displayed above
│ ├─ bw2data 4.0.dev18 [required: >=4.0.dev17]
│ │ └─ dependencies of bw2data displayed above
│ ├─ bw_migrations 0.2 [required: any]
│ │ ├─ bw2data 4.0.dev18 [required: any]
│ │ │ └─ dependencies of bw2data displayed above
│ │ ├─ pandas 2.0.0 [required: any]
│ │ │ └─ dependencies of pandas displayed above
│ │ ├─ python 3.11.3 [required: >=3.7]
│ │ │ └─ dependencies of python displayed above
│ │ └─ stats_arrays 0.6.5 [required: any]
│ │ └─ dependencies of stats_arrays displayed above
│ ├─ bw_processing 0.8.2 [required: any]
│ │ └─ dependencies of bw_processing displayed above
│ ├─ lxml 4.9.2 [required: any]
│ │ └─ dependencies of lxml displayed above
│ ├─ mrio_common_metadata 0.2.1 [required: any]
│ │ ├─ openpyxl 3.1.1 [required: any]
│ │ │ ├─ et_xmlfile 1.1.0 [required: any]
│ │ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ ├─ python 3.11.3 [required: >=3.11,<3.12.0a0, *_cpython]
│ │ │ │ └─ dependencies of python displayed above
│ │ │ └─ python_abi 3.11 [required: 3.11.*, *_cp311]
│ │ ├─ pandas 2.0.0 [required: any]
│ │ │ └─ dependencies of pandas displayed above
│ │ ├─ python 3.11.3 [required: >=3.6]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ pyxlsb 1.0.10 [required: any]
│ │ │ └─ python 3.11.3 [required: >=3.6]
│ │ │ └─ dependencies of python displayed above
│ │ ├─ scipy 1.10.1 [required: any]
│ │ │ └─ dependencies of scipy displayed above
│ │ └─ xlrd 2.0.1 [required: any]
│ │ └─ python 3.11.3 [required: >=3.6]
│ │ └─ dependencies of python displayed above
│ ├─ numpy 1.24.2 [required: >=1.20]
│ │ └─ dependencies of numpy displayed above
│ ├─ openpyxl 3.1.1 [required: any]
│ │ └─ dependencies of openpyxl displayed above
│ ├─ psutil 5.9.4 [required: any]
│ │ └─ dependencies of psutil displayed above
│ ├─ pyprind 2.11.2 [required: any]
│ │ └─ dependencies of pyprind displayed above
│ ├─ python 3.11.3 [required: >=3.9]
│ │ └─ dependencies of python displayed above
│ ├─ scipy 1.10.1 [required: any]
│ │ └─ dependencies of scipy displayed above
│ ├─ stats_arrays 0.6.5 [required: >=0.6.5]
│ │ └─ dependencies of stats_arrays displayed above
│ ├─ tqdm 4.65.0 [required: any]
│ │ └─ dependencies of tqdm displayed above
│ ├─ unidecode 1.3.6 [required: any]
│ │ └─ python 3.11.3 [required: >=3.5]
│ │ └─ dependencies of python displayed above
│ ├─ voluptuous 0.13.1 [required: any]
│ │ └─ dependencies of voluptuous displayed above
│ ├─ xlrd 2.0.1 [required: any]
│ │ └─ dependencies of xlrd displayed above
│ └─ xlsxwriter 3.0.9 [required: any]
│ └─ python 3.11.3 [required: >=3.6]
│ └─ dependencies of python displayed above
├─ bw_migrations 0.2 [required: any]
│ └─ dependencies of bw_migrations displayed above
├─ bw_processing 0.8.2 [required: >=0.8.2]
│ └─ dependencies of bw_processing displayed above
├─ matrix_utils 0.2.5 [required: >=0.2.5]
│ └─ dependencies of matrix_utils displayed above
├─ mrio_common_metadata 0.2.1 [required: any]
│ └─ dependencies of mrio_common_metadata displayed above
├─ numpy 1.24.2 [required: any]
│ └─ dependencies of numpy displayed above
├─ python 3.11.3 [required: >=3.9]
│ └─ dependencies of python displayed above
└─ stats_arrays 0.6.5 [required: >=0.6.5]
└─ dependencies of stats_arrays displayed above
I encountered different issues when loading bw2data in the test-notebook. First, I had to little memory available, but that was fixed by closing some other browser tabs. Then this popped up:
ImportError: dynamic module does not define module export function (PyInit_interval)
Hopefully, there's a way around this!
As per the Pyodide Documentation "Why can’t Micropip find a “pure Python wheel” for a package?" packages for installation with micropip must have pure python wheels (*py3-none-any.whl) on PyPI.
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