brianlohman Goto Github PK
Name: Brian Lohman
Type: User
Brian Lohman's Projects
brianlohman.github.io
Personal Website
cellranger-nf
A Nextflow wrapper for 10X Cellranger to wrangle the 10,000+ output files per sample
clinical-components
Summarize the clinical (or lab) components and correlations of your dataset.
ctseq-nf
A Nextflow wrapper for ctseq
docker
Docker containers for various purposes
nim_tools
Collection of in progress tools for genomics with nim
pdx-nf
A Nextflow workflow to generate gene counts from PDX bulk RNAseq data
py_tools
Collection of in progress scripts for genomics with python
r_tools
A collection of scripts in progress
rnaseq-variant-calling-nf
A Nextflow workflow to call variants with GATK from bulk RNAseq data
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
singlecellgarage
My R package of utilities for working with single cell data
star-rsem-scrnaseq-nf
Run STAR and RSEM on scRNAseq data demultiplexed by cell barcode
tagseqmethods
workflows
Workflows with Nextflow
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.