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Comments (8)

calebgeniesse avatar calebgeniesse commented on May 21, 2024 1

went ahead and merged the relevant changes into master with pull request #9

@jsmentch, hope this does the trick, but let me know if you have any other problems!

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jsmentch avatar jsmentch commented on May 21, 2024 1

That worked, I can now run the sample notebooks with no issues, thank you!!

I'm still having trouble installing it in a singularity recipe but that is unrelated and on my end w/ github/singularity/neurodocker and for now can work around this. Thanks again.

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calebgeniesse avatar calebgeniesse commented on May 21, 2024 1

@jsmentch Awesome, thanks for letting me know.

I am not too familiar with singularity/docker/etc, but let me know if there's anything else I can do to help!

And if you (or anyone from the future) figure out how to setup a container, feel free to share/contribute your findings (i.e., see Issue #1, or submit a new pull request)

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calebgeniesse avatar calebgeniesse commented on May 21, 2024

@jsmentch, thanks for reporting!

definitely looks familiar, and pretty sure it is due to some lazy coding on my part

sorry for the delay, but should have this resolved for you ASAP

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calebgeniesse avatar calebgeniesse commented on May 21, 2024

removing all the calls to matplotlib.use should get rid of the errors (see #9)

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jsmentch avatar jsmentch commented on May 21, 2024

If there is an updated simple pip install or conda install version released online sometime then I may be able to create a container using neurodocker for that release.

As I learn how to use containers if I'm able to do that or install from source I will make a pull request

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calebgeniesse avatar calebgeniesse commented on May 21, 2024

Not sure what neurodocker expects, but technically, you can run

pip install git+git://github.com/braindynamicslab/dyneusr.git

Otherwise, I will try to push an updated build to pypi.org as soon as possible.

And that'd be great, thanks!

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calebgeniesse avatar calebgeniesse commented on May 21, 2024

@jsmentch, just uploaded the latest build, dyneusr==0.3.5!

https://pypi.org/project/dyneusr/

let me know if you have any problems

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