borisdelange / linkr Goto Github PK

To share a project, download a tar with only rows concerning current project.

Share a datamart or a study.

Download :

• Plugins from plugins table with only used plugins for this projet.
• Studies related to chosen datamart
• Subsets related to chosen datamart or study
• Datamart code
• Thesaurus code & items
• Modules families, modules & modules elements
• Modules elements options
• Patients options

Add the possibility to convert units (ie creatininemia from mg/L to µmol/L)

When all the dropdowns are filled in patient-level data page, when we go the aggregated data page, reactivity is frozen, modules are not displayed.

Deploy a version on shinyapps.io

With only patient-level data & aggregated data pages.

With 2 or 3 plugins (flowchart, table 1, report...)

Without the settings page.

For orders applied in columns.

See here : https://github.com/rstudio/DT/issues/76

library(DT)
datatable(mtcars, options = list(
  search = list(search = 'Ma'), order = list(list(2, 'asc'), list(1, 'desc'))
))

These info can be obtained from the list input$outputId_state.

Consider choose time zone in settings...

Load dataframes with correct timezone...

When we change the current page, with shiny.router, reactivity is frozen (clicking on an action button doesn't do anything).

In app database, create a column 'version' in plugins table.

In plugins page, choose the version we want to use.

In import a plugin page, if we import a different version, do not erase old version.

Enhance UX with adding a dropdown to filter on module family, on patient-lvl & aggregated modules.

A better solution is to save column filter on datatable, but had some difficulties with that...

As an example, there are too much dropdowns in patient-level data page.

Display dropdowns gradually (datamart, then studies etc) would make it easier.

Saving database from the app launched from a RStudio Server account may not work.
Need to create a temp dir with csv, before downloading tar file.
Maybe a user access that do not allow to create the temp file ?

Currently, it is possible to download database (tar file containing csv for each table).
Create a function to upload database from a tar file (to restore database with a previous export).

Create a page inside the app to display existing plugins.

Connection to github content with markdown description, screenshots with minimal examples.

+/- add a video

In r$stays variable, change unit_name to item_id, and add thesaurus_name.

The unit should be a thesaurus item, then the user can change the name of the units.

When we launch the app with

cdwtools::cdwtools()

If we havn't specified the wd with

setwd(find.package("cwdtools"))

All the functions run from inside the app doesn't work.

Need to setwd from inside the app, but I have a problem to run setwd to the global environment.

Separate render_datatable function & the creation of the action & dropdowns columns (currently, all is done by render_settings_datatable).

Change local database file path.
For now, it is on the library directory. So database is deleted when library is updated or when package is uninstalled.

Currently, age col is in r$patients variable.

We have to put it in r$stays variable, cause age is calculated with admission_age col.

Add a functionnality to create a module, a module element from the pages patient_lvl_data & aggregated_data.

Add the possibility to edit a module element, or delete a module element, from these pages.