export SCRAM_ARCH=slc6_amd64_gcc700
#or
setenv  SCRAM_ARCH slc6_amd64_gcc700
cmsrel CMSSW_10_2_10
cd CMSSW_10_2_10/src
cmsenv
git cms-init

# checkout Gamma Preliminary Energy Corrections
# https://twiki.cern.ch/twiki/bin/view/CMS/EgammaPostRecoRecipes
git cms-merge-topic cms-egamma:EgammaPostRecoTools #just adds in an extra file to have a setup function to make things easier
git cms-merge-topic cms-egamma:PhotonIDValueMapSpeedup1029 #optional but speeds up the photon ID value module so things fun faster
git cms-merge-topic cms-egamma:slava77-btvDictFix_10210 #fixes the Run2018D dictionary issue, see https://github.com/cms-sw/cmssw/issues/26182
#now to add the scale and smearing for 2018 (eventually this will not be necessary in later releases but is harmless to do regardless)
git cms-addpkg EgammaAnalysis/ElectronTools
rm EgammaAnalysis/ElectronTools/data -rf
git clone [email protected]:cms-data/EgammaAnalysis-ElectronTools.git EgammaAnalysis/ElectronTools/data
scram b -j 8

# get code to run ecalBadCalibReducedMINIAODFilter on MiniAOD
# https://twiki.cern.ch/twiki/bin/view/CMS/MissingETOptionalFiltersRun2
git cms-addpkg RecoMET/METFilters
scram b

git clone https://github.com/bsmAnalysis/BSMHiggs_fwk.git UserCode/bsmhiggs_fwk
cd $CMSSW_BASE/src/UserCode/bsmhiggs_fwk
git checkout -b modified
#Switching from 2016 version to 2017 (compatible with 2018) by running:
cd test/haa4b
sh ./converter.sh # input 1 when you are prompted to select
cd $CMSSW_BASE/src

#And compile
scram b -j 4

export SCRAM_ARCH=slc6_amd64_gcc630
#or
setenv SCRAM_ARCH slc6_amd64_gcc630
cmsrel CMSSW_9_4_9
cd CMSSW_9_4_9/src
cmsenv
git cms-init

#Packages to rerun electrons energy correction
#https://twiki.cern.ch/twiki/bin/view/CMS/EgammaMiniAODV2#2017%20MiniAOD%20V2
git cms-merge-topic cms-egamma:EgammaPostRecoTools
scram b -j 4

#Calculating corrections and uncertainties on MET
#https://twiki.cern.ch/twiki/bin/viewauth/CMS/MissingETUncertaintyPrescription#Instructions%20for%20%209_4_X,%20X%20%3E=0%20f
git cms-merge-topic cms-met:METFixEE2017_949_v2
scram b -j 4

#Add Fall17_94X_V2 ID for electrons
#https://twiki.cern.ch/twiki/bin/view/CMS/CutBasedElectronIdentificationRun2
git cms-merge-topic cms-egamma:EgammaID_949
scram b -j 4

#Add Fall17_94X_V2 ID for photons
#https://twiki.cern.ch/twiki/bin/view/CMS/CutBasedPhotonIdentificationRun2
git cms-merge-topic lsoffi:CMSSW_9_4_0_pre3_TnP
scram b -j 10
# Add the area containing the MVA weights (from cms-data, to appear in "external").
# Note: the "external" area appears after "scram build" is run at least once, as above
cd $CMSSW_BASE/external/slc6_amd64_gcc630/
git clone https://github.com/lsoffi/RecoEgamma-PhotonIdentification.git data/RecoEgamma/PhotonIdentification/data
cd data/RecoEgamma/PhotonIdentification/data
git checkout CMSSW_9_4_0_pre3_TnP
cd $CMSSW_BASE/external/slc6_amd64_gcc630/
git clone https://github.com/lsoffi/RecoEgamma-ElectronIdentification.git data/RecoEgamma/ElectronIdentification/data
cd data/RecoEgamma/ElectronIdentification/data
git checkout CMSSW_9_4_0_pre3_TnP
cd $CMSSW_BASE/src

# get code to run ecalBadCalibReducedMINIAODFilter on MiniAOD
# https://twiki.cern.ch/twiki/bin/view/CMS/MissingETOptionalFiltersRun2
git cms-addpkg RecoMET/METFilters
scram b

git clone https://github.com/bsmAnalysis/BSMHiggs_fwk.git UserCode/bsmhiggs_fwk
cd $CMSSW_BASE/src/UserCode/bsmhiggs_fwk
git checkout -b modified #copy the branch to a new one to host future modifications (ease pull request and code merging)
#Switching from 2016 version to 2017 by running:
cd test/haa4b
sh ./converter.sh # input 1 when you are prompted to select
cd $CMSSW_BASE/src

#And compile
scram b -j 4

export SCRAM_ARCH=slc6_amd64_gcc530
#or:
setenv SCRAM_ARCH slc6_amd64_gcc530
cmsrel CMSSW_8_0_26_patch1
cd CMSSW_8_0_26_patch1/src
cmsenv
 
#Checkout Some Packages from Egamma 
# ( https://twiki.cern.ch/twiki/bin/viewauth/CMS/EGMRegression#Consistent_EGMSmearer )
git cms-init 
git cms-merge-topic cms-egamma:EGM_gain_v1
cd $CMSSW_BASE/src/EgammaAnalysis/ElectronTools/data
git clone -b Moriond17_gainSwitch_unc https://github.com/ECALELFS/ScalesSmearings.git
cd $CMSSW_BASE/src
scram b -j 8

#Adding DeepCSV
git cms-merge-topic -u mverzett:DeepFlavour-from-CMSSW_8_0_21 
mkdir $CMSSW_BASE/src/RecoBTag/DeepFlavour/data/
cd $CMSSW_BASE/src/RecoBTag/DeepFlavour/data/  
wget http://home.fnal.gov/~verzetti//DeepFlavour/training/DeepFlavourNoSL.json
cd $CMSSW_BASE/src/ 
scram b -j 8

# Check out packages for Hbb tagging (https://twiki.cern.ch/twiki/bin/viewauth/CMS/Hbbtagging#8_0_X)
setenv CMSSW_GIT_REFERENCE /cvmfs/cms.cern.ch/cmssw.git.daily
#or
export CMSSW_GIT_REFERENCE=/cvmfs/cms.cern.ch/cmssw.git.daily
git cms-init
git remote add btv-cmssw https://github.com/cms-btv-pog/cmssw.git
git fetch --tags btv-cmssw
git cms-merge-topic -u cms-btv-pog:BoostedDoubleSVTaggerV4-WithWeightFiles-v1_from-CMSSW_8_0_21
scram b -j 8

#git clone -b svFit_2015Apr03 https://github.com/veelken/SVfit_standalone.git TauAnalysis/SVfitStandalone

#https://twiki.cern.ch/twiki/bin/viewauth/CMS/MissingETUncertaintyPrescription#Instructions_for_8_0_X_X_26_patc
git cms-merge-topic cms-met:METRecipe_8020 -u
git cms-merge-topic cms-met:METRecipe_80X_part2 -u


git clone https://github.com/bsmAnalysis/BSMHiggs_fwk.git UserCode/bsmhiggs_fwk
cd $CMSSW_BASE/src/UserCode/bsmhiggs_fwk
git checkout -b modified #copy the branch to a new one to host future modifications (ease pull request and code merging)
cd $CMSSW_BASE/src

## HiggsCombine in 80X 
cd $CMSSW_BASE/src
git clone https://github.com/cms-analysis/HiggsAnalysis-CombinedLimit.git HiggsAnalysis/CombinedLimit
cd HiggsAnalysis/CombinedLimit
git fetch origin
##Update to a reccomended tag - currently the reccomended tag is v7.0.13
# http://cms-analysis.github.io/HiggsAnalysis-CombinedLimit/
git checkout v7.0.13
scramv1 b clean; scramv1 b # always make a clean build
cd ../../

#JetToolBox: https://twiki.cern.ch/twiki/bin/viewauth/CMS/JetToolbox
git clone [email protected]:cms-jet/JetToolbox.git JMEAnalysis/JetToolbox -b jetToolbox_80X_V3

#And compile
scramv1 b -j 16