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wiad's Introduction

License: AGPL v3

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WIAD: Wood Image Analysis and Dataset

The Wood Image Analysis and Dataset is a dynamic interface to extract, store and share data from images of tree rings, such as annual ring width.

WIAD presents a dynamic interface for a wide range of scientists in archeology, ecology, geology, climatology and chronology disciplines to digitise and analyze their tree ring imagery easily, back up results and share them with collaborators and the public.

Installation

Install from CRAN

The WIAD R package has been published on The Comprehensive R Archive Network (CRAN). The latest tested WIAD package can be installed from the CRAN packages repository by running the following command in an R environment:


utils::install.packages('wiad', repos = "https://cran.us.r-project.org" )

Install from GitHub

Alternatively, the latest beta release of WIAD can be directly downloaded and installed from the GitHub repository:

# install devtools first
if(!require(devtools)) install.packages('devtools')

# installing the package from the GitHub repo
devtools::install_github('RademacherTim/wiad')

# loading the package
library(wiad)

Usage

The interactive mode can be launched from an interactive R environment by the following command.


library(wiad)
Launch()

or


wiad::Launch()

or form the command line (e.g., shell in Linux, Terminal in macOS and Command Prompt in Windows machines) where an R engine is already installed by:


Rscript -e "wiad::Launch(Interactive = TRUE)"

Calling the Launch function opens up the WIAD app in the system’s default web browser.

wiad's People

Contributors

bnasr avatar dabasler avatar rademachertim avatar

Stargazers

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Watchers

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wiad's Issues

Add embargo request to tool

We need to offer at least the possibility to request and certain embargo period. I suggest up to four years in six month increments. Although I could be convinced to make it three years only or three and a half. The default should be no embargo in my opinion.

plot tab

error in evaluating the argument 'x' in selecting a method for function 'nrow': object 'data2' not found

Remove useless dependencies

Hello
It seems you are importing dplyr just for the pipe (%>%) operator. This operator is in the magrittr package (dplyr just reexport it).
magrittr as no real sub dependencies whereas dplyr has a lot !
It will vastly reduce the number of packages to install for your users.

Terms and conditions

I wrote a first draft for the terms and conditions, but they will need updating once we have published a paper showing the accuracy of the tool. Please also read through them and make sure they make sense so far and that I did not forget anything. Finally, what copyright do we want the data to be under? I would not want it to be freely available for commercial operations, but for research and teaching.

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