Name: Biomedical Knowledge Engineering Group
Type: Organization
Bio: Older legacy organization for Knowledge Engineering work by Gully Burns at the Information Sciences Institute (USC). See @GullyBurns
Location: Information Sciences Institute, Marina del Rey
Blog: http://bmkeg.github.io
Biomedical Knowledge Engineering Group's Projects
Core functionality for a VPDMf based triage application
Tabula is a tool for liberating data tables trapped inside PDF files
instal4j project for triage application
Simple interaction code to define BioC as a UIMA type and provide support for it's use in text mining applications based on the CleartTk UIMA system.
UIMA Wrapper for the Fanse Parser (Tratz & Hovy 2011)
This library manages all low-level interactions with our UML-based metamodel for the data schema of any given system. This includes systems to read various types of UML and other systems to auto-generate code for various languages (currently mainly java and actionscript)
VPDMf model for the Index Card structure required by the Big Mechanism DARPA program
VPDMf models and views for the BioScholar system (bringing together digital library and KEfED).
VPDMf model for the Cycle of Scientific Investigation model
VPDMf model for the digital library system
VPDMf model for full text documents (designed to work with lapdftext)
VPDMf model for KEfED systems
VPMDf model for the Ontology of Experimental Variables and Values
VPDMf model for people
VPDMf model for terminology (from ontologies)
VP
Implementation of SOLR and other BigData technologies within VPDMf architecture
The core components of the VPDMf system including tools to build and manage linked systems in MySQL, Java and Flex.
Utilities and reusable flex components for use across multiple projects
Offshoot of vpdmfCore, extracting all code generation capabilities to provide better delineated system.
All vpdmf models built under our current system.
High-level build project for all VPDMf submodules