Comments (1)
Thank you for the very comprehensive report! I believe you are quite right as to what was going wrong. Many functions do indeed expect everything to be sorted alphabetically.
I applied a quick fix which at least makes your example work now. It'll be applied either tomorrow or the day after in the bioconductor release version, should you still be interested.
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Related Issues (18)
- shuffle_sequence truncated HOT 2
- read_meme() yields out that "alphabet type cannot be detected" although "ALPHABET= ACGT" is provided HOT 1
- importing pwd by read_cisbp HOT 3
- Cannot get scan_sequences to report p-values HOT 11
- Improve support for metadata-based manipulations HOT 22
- new view_motifs() function plots in alphabetical order instead of list input order HOT 2
- error in install HOT 15
- update_motif on motifs with 1 extrainfo column gives misnamed results
- Error with read_meme HOT 5
- Option to deprotect `motif` column in universalmotif_df HOT 3
- validObject_universalmotif(motifs) fails when strand is "*" HOT 2
- R session aborted / fatal error when running read_homer from a list of motifs HOT 5
- Can't run meme with custom alphabet HOT 7
- How to merge motifs with variable length of gap HOT 7
- Error in convert_motifs for TFBStools-PFMatrixList HOT 10
- read_meme fails when alphabet is DNA/RNA/AA-LIKE or custom
- altname is dropped during summarise_motif
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