Comments (2)
Hmm. Would you mind trying the development version? The internal shuffle_sequences() code has been completely rewritten.
BiocManager::install("universalmotif", version = "devel")
If this still doesn't work, please send me some example sequences which trigger this error. If I were to guess, it has to do with unrecognised characters, but it's hard to tell without seeing the fasta file.
from universalmotif.
New Bioconductor release, which means your question is likely now outdated. Feel free to reopen if you still run into problems with the new version.
from universalmotif.
Related Issues (18)
- read_meme() yields out that "alphabet type cannot be detected" although "ALPHABET= ACGT" is provided HOT 1
- importing pwd by read_cisbp HOT 3
- Cannot get scan_sequences to report p-values HOT 11
- Improve support for metadata-based manipulations HOT 22
- new view_motifs() function plots in alphabetical order instead of list input order HOT 2
- error in install HOT 15
- update_motif on motifs with 1 extrainfo column gives misnamed results
- Error with read_meme HOT 5
- Option to deprotect `motif` column in universalmotif_df HOT 3
- validObject_universalmotif(motifs) fails when strand is "*" HOT 2
- R session aborted / fatal error when running read_homer from a list of motifs HOT 5
- Can't run meme with custom alphabet HOT 7
- How to merge motifs with variable length of gap HOT 7
- Error in convert_motifs for TFBStools-PFMatrixList HOT 10
- `create_motif` makes incorrect motif for amino acid sequences HOT 1
- read_meme fails when alphabet is DNA/RNA/AA-LIKE or custom
- altname is dropped during summarise_motif
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from universalmotif.