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padix-key avatar padix-key commented on August 25, 2024

The new GenBank file interface of Biotite 0.14 allows directly accessing the ORGANSIM subfield. However, this interface retrieves the subfield as plain text, extracting the phylogenetic classifications is up to the user

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padix-key avatar padix-key commented on August 25, 2024

Since there are multiple schemes for phylogenetic classification, there is no clear solution for the demanded functionality. Please use the low-level API to extract the ORGANSIM subfield and parse the content with a custom function.

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