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Patrick Kunzmann's Projects

biopython icon biopython

Official git repository for Biopython (converted from CVS)

biotite icon biotite

A comprehensive library for computational molecular biology

cython icon cython

The most widely used Python to C compiler

fastpdb icon fastpdb

A high performance drop-in replacement for Biotite's PDBFile.

gecos icon gecos

Generated color schemes for sequence alignment visualizations

gha-mamba icon gha-mamba

Test repository for reproducing Mamba issue in GitHub actions

hydride icon hydride

Adding hydrogens to molecular models

libgdx icon libgdx

Desktop/Android/HTML5/iOS Java game development framework

mdtraj icon mdtraj

An open library for the analysis of molecular dynamics trajectories

metapredict icon metapredict

A machine learning based protein disorder predictor.

molecularnodes icon molecularnodes

Addon and nodes for working with structural biology and molecular data in Blender.

openmm icon openmm

OpenMM is a toolkit for molecular simulation using high performance GPU code.

prody icon prody

A Python Package for Protein Dynamics Analysis

rdkit icon rdkit

The official sources for the RDKit library

rdkit-pypi icon rdkit-pypi

⚛️ RDKit Python Wheels on PyPI. 💻 pip install rdkit

scanpy icon scanpy

Single-cell analysis in Python. Scales to >1M cells.

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

sphinx-gallery icon sphinx-gallery

Sphinx extension for automatic generation of an example gallery

springcraft icon springcraft

Investigate molecular dynamics with elastic network models

tableconvert icon tableconvert

A Python module that simply converts pasted spreadsheet data into a numpy array

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