biosemantics / glossaries Goto Github PK

If you want to contribute, you can do so by

• using OTO, which populates this repository programmatically
• Manually update the repository following the conventions outlined below

The glossaries are stored as CSV in a directory structure where

• The first level directory name specifies the glossary type
• The second level directory name specifies the glossary version
• The second level directory contains the term_category and syns glossary files. These are to be named as:
  • glossary type_glossary_term_category.csv
  • glossary type_glossary_syns.csv
• A latest directory must exist on the second level with a duplicate of the files of the latest version

If you create or modify term_category file please follow the following CSV schema where

• glossary version and glossary type are required
• All lines are required, and hence line number 10 would contain the first data
• CSV values are seperated using comma ,
• CSV values are quoted using double quotes "
• Quotes are escaped using a backslash \
• No extra lines (e.g. empty lines) at the of the file
• The files is encoded using UTF8

For term_category this looks like

#Version: `glossary version`
#Glossary type: `glossary type`
#Source: 
#Finalized by: 
#Date:
#Reviewers: 
#Source producer: 

"term","category","hasSyn","sourceDataset","termID"
"my term", "my category", "0", "my source dataset", "some id"
...

Likewise for syns

#Version: `glossary version`
#Glossary type: `glossary type`
#Source: 
#Finalized by: 
#Date:
#Reviewers: 
#Source producer: 

"term","category","synonym","termID"
"my term", "my category", "my synonym", "some id"
...