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negbio2's Issues

Directions for installing in google colab

I'm having trouble running in google colab

  1. !/content/negbio2/negbio/negbio_pipeline neg --output=/content/negbio2/ /content/negbio2/1.xml

gives this error:
/bin/bash: /content/negbio2/negbio/negbio_pipeline: No such file or directory

  1. !python /content/negbio2/negbio/negbio_pipeline neg --output=/content/negbio2/ /content/negbio2/1.xml

gives this error:
python3: can't open file '/content/negbio2/negbio/negbio_pipeline': [Errno 2] No such file or directory

  1. !python /content/negbio2/negbio/negbio_pipeline.py neg2 --output=/content/negbio2/ /content/negbio2/1.xml

gives this error:
Traceback (most recent call last):
File "/content/negbio2/negbio/negbio_pipeline.py", line 24, in
from negbio.cli_utils import parse_args
ModuleNotFoundError: No module named 'negbio'

Writing New Patterns

Hi

I want to add new patterns to neg_patterns2.yml, but I don't understand the format. Can you explain the format for writing new patterns.

The pattern I want to add is for identifying (deny/denies/denying)
An example of it is: He denies smoking tobacco / He denies smoking any tobacco

Thanks

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