getindex not defined for arrays about biosequences.jl HOT 5 CLOSED

Thanks for pointing this out @diegozea, perhaps we can include this method in version 2.0.

from biosequences.jl.

I have been going over the source code to get familiar and to add this functionality. I could not understand how the decode function call in indexing.jl properly decodes the given Int representation. I could not find a decode function in the source code. Below is the corresponding code from indexing.jl:

@inline function inbounds_getindex(seq::BioSequence{A}, i::Integer) where {A}
    j = bitindex(seq, i)
    @inbounds return decode(A, (seq.data[index(j)] >> offset(j)) & mask(A))
end

from biosequences.jl.

@ardakdemir The definitions for encode and decode are found here in the body of this loop

from biosequences.jl.

@benjward Thanks for the explanation. @diegozea I have added a trivial implementation of subsequencing functionality on the "subsequencing" branch. Maybe you can give it a try.

from biosequences.jl.

This appears to be fixed on master, so closing it

from biosequences.jl.