This script is designed to transform blast format 6 (tabular with 11 columns) into a gff file, along with some filters.
blastm6_to_gff.py --file [FILE] --source [SOURCE] --bitscore [BITSCORE]
Options | Description |
---|---|
file | The input file produced by blast with output format 6 (tabular). |
source | The mode in which blast was performed, e.g. blastn, blastp, tblastx, ... |
bitscore | Bitscore obtained by blast. Used to add a level of filter to the result. If 0, all results will be maintained. |