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episafari

EpiSAFARI: Sensitive Detection of Valley Shaped Patterns in Epigenetic Signal Profiles

fucking-algorithm

手把手撕LeetCode题目，扒各种算法套路的裤子。English version supported! Crack LeetCode, not only how, but also why.

gacp

Identifying genetic alterations that affect cell phenotype from genetic screen data

genomics

Scripts, utilities and programs for genomic bioinformatics.

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics

goproxy

🔥 Proxy is a high performance HTTP(S) proxies, SOCKS5 proxies,WEBSOCKET, TCP, UDP proxy server implemented by golang. Now, it supports chain-style proxies,nat forwarding in different lan,TCP/UDP port forwarding, SSH forwarding.Proxy是golang实现的高性能http,https,websocket,tcp,socks5代理服务器,支持内网穿透,链式代理,通讯加密,智能HTTP,SOCKS5代理,黑白名单,限速,限流量,限连接数,跨平台,KCP支持,认证API。

grand

GRAND database of gene regulatory networks.

graphx-labelpropagation

An implementation of label propagation from the paper "Learning from labeled and unlabeled data with label propagation"

integrative_analysis_er

introduction-to-machine-learning-based-on-mathematical-principles-with-python

This is the source code of the book "Introduction to Machine Learning Based on Mathematical Principles with Python".

iswine

Model training for ISwine

labs

Rmd source files for the HarvardX series PH525x

lncrna-screen

lncRNA-screen

machine_learning

Python coded examples and documentation of machine learning algorithms.

mirna_mvct

Multi-view co-training applied to microRNA prediction. Accompanies "Multi-view Co-training for microRNA Prediction" manuscript by Mohsen Sheikh Hassani & James R. Green

mutect-nf

Mutect pipeline with Nextflow

mutpanningv2

This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause open source license.

mutspot

mw-belhocine2021

Metaworkflow module for the analyses done for the article "Dynamic of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes"

nnpulearning

Non-negative Positive-Unlabeled (nnPU) and unbiased Positive-Unlabeled (uPU) learning reproductive code on MNIST and CIFAR10

oncorank

pasio

Pasio is a tool for denoising profiles coming from DNA-sequencing data like ATAC-seq, DNA-seq or ChIP-seq.

platinumgenomes

The Platinum Genomes Truthset

probabilistic2020

Simulates somatic mutations, and calls statistically significant oncogenes and tumor suppressor genes based on a randomization-based test

pumml

Positive and Unlabeled Materials Machine Learning (pumml) is a code that uses semi-supervised machine learning to classify materials from only positive and unlabeled examples.

pywsl

Python codes for weakly-supervised learning

radar

RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.

riblast

RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome analysis

rssl

A Semi-Supervised Learning package for the R programming language

scdmdetection