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trait-intertegular-distance's Introduction

trait-intertegular-distance

SWH

Repository with datasets measuring intertegular distance from the Big Bee project. Measurements were recorded using Notes From Nature data portal and microscope measurements.

data description

Each folder contains several files:

  • 22794_reconciled.csv - reconciled using Notes from Nature
  • 22794_summary.html - Summary of the data collection including number of people who participated online
  • 22794_unreconciled.csv - unreconciled data, suggested to use this file for evaluating datasets
  • ucsbees-measurements-classifications.csv - ?

trait definition

Intertegular distance is measured based on Cane, 1987

Screen Shot 2023-02-10 at 2 52 18 PM

Ontology class

http://purl.obolibrary.org/obo/HAO_0002584

protocols used to measure ITS in submitted data

Several methods are used to measure ITS within this dataset. Those methods are described here.

Crowd source measurements via Notes from Nature: using a custom measurement tool in Notes From Nature. Five measurements are created from five different users on Notes from Nature. Measurements are reconciled to one measurement. See tutorial on https://www.zooniverse.org/projects/md68135/notes-from-nature-big-bee-bonanza.

Measured under microscope: measured under microscope using graticule.

references

Cane, J. H. 1987. Estimation of bee size using intertegular span (Apoidea). J. Kansas Entomol. Soc. 60:145-147.

trait-intertegular-distance's People

Contributors

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trait-intertegular-distance's Issues

translate one (or more) intertegular distance metrics into the nanopub-verse

Hi @tkuhn -

To prepare for our upcoming nano session next week (see invite below), I figured to share some bee trait measurements made by @seltmann et al. For examples of related bee specimen (and their 3d models!) see https://github.com/Big-Bee-Network/UCSB-IZC00012194 .

For example data published in wide table format, see https://github.com/Big-Bee-Network/trait-intertegular-distance .

If you have some example pre-existing nanopubs related to measurements of some metric of some sample / specimen, please do share. Working from a well curated selection of examples helps me to more quickly come up with representations of the traits in the nanopub-verse. (nano-verse? nanopub world?).

Also, related is #1 where I am hoping to work with @Daniel-Mietchen to bridge into the exciting world of wikidata.

Looking forward to your thoughts and discussion / please feel free to to share this with others.


Upcoming Nano Session invite:

What

  1. How Big is that Bee? On Distributed Publishing of Existing Digitized Specimen Records and Their Derived Knowledge. Speaker: Jorrit Poelen, https://jhpoelen.nl/.
  2. Moving from Bench to Dash: Demo of the new online mode of the nanopublishing tool Nanobench / Nanodash and an update on some of the new and planned features. Speaker: Tobias Kuhn, https://www.tkuhn.org/.
  3. Discussion
  4. Newsdesk: Latest developments and interesting reads. Everybody can share news and links.

When
Coming Tuesday 28 February 4 p.m. CET for 1 hour

Where
https://vu-live.zoom.us/j/97176002956?pwd=UHh5MGJWNHpEcFZKbTA0Kzcrc29TQT09

About the meetings
The Nano Sessions connect the people who are interested in nanopublications and who want to learn from each other about the related technologies. Every session has two talks, discussion and a news sharing part. Knowledge Pixels hosts the first meetings, but we are happy to let others join and become hosts too. For more information on the Nano Sessions see https://docs.google.com/document/d/1-0aImR4bFHmay8j6bSFgIDi9sw01KXdmYw9szyhAWmY/edit#
Do you have someone in mind that could be interested in nanopublications? The meetings are open to everyone and invitations are sent out via https://groups.google.com/g/nanopub-users/

Save the dates
About once a month on Tuesdays at 16:00 CET: 28 March, 18 April, 30 Mai.
Do you want to share some insights, a problem you can’t solve, or a use case you are working on? Drop me a note to get a slot in an upcoming session.

I look forward to seeing you.
With kind regards your host, Philipp

suggest to include content id (e.g., sha256 hash) of image used to measure intertegular distance

To aid linking of digital images used to measure intertegular distance in Note for Nature, suggest to include the content id (e.g., sha256 hash) of the image in addition to including their filenames. With this content id, we can verify (and retrieve!) the exact image used to measure the trait.

@seltmann curious to hear your thoughts on this, and happy to help build tools to (automatically) calculate the sha256 URIs for images or other digital content.

Add LICENSE

to clarify reusability.

For data like this, CC0 would seem to be appropriate.

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