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halo_inpatient's Introduction

HALO

DOI

This is the source code for reproducing the inpatient dataset experiments found in the paper "Synthesizing Extremely High Dimensional Electronic Health Records."

Setup the environment:

pip install -r requirements.txt

Converting the dvlog to suitable format

First please create a "dvlog" folder and place "visual.csv" and acoustic.csv under it.

python build_acoustic_dataset.py
python build_visual_dataset.py

Once completed, there should be two folders "acoustic" and "visual" under the "dvlog" folder.

Training a model

First create a "save" folder, then run:

python train_model_acoustic.py
python train_model_visual.py

Once completed, the trained models should be saved under /save.

Generating the Dataset

Generate synthetic dataset by:


python test_model_acoustic.py
python test_model_visual.py

Once generation is completed, the synthetic dataset should be under results/acousticsets and results/visualsets in .pkl format.

halo_inpatient's People

Contributors

btheodorou99 avatar bernardo1998 avatar

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