Error running propkatraj as in tutorial about propkatraj HOT 2 CLOSED

I installed propka using the instructions in: https://github.com/jensengroup/propka-3.1
I checked my folders:
in /Users/nehade/.local/lib/python3.5/site-packages/
PROPKA-3.1-py3.5.egg is a file not a folder. And so I don't have PROPKA-3.1-py3.5.egg/propka/lib.py
I removed propka then reinstalled it using PyPi and it worked!
Many thanks

from propkatraj.

I tried this locally (Python 3.6 on macOS 10.12 with MDAnalysis 0.19.2) and this works as expected. Did you install propka with

pip install propka

?

Check that your propka/lib.py contains the following code https://github.com/jensengroup/propka-3.1/blob/91925bb92092d3b180a9c086e81822a3fdec6939/propka/lib.py#L16-L41 (click on the link to see the code). Your installed file is /Users/nehade/.local/lib/python3.5/site-packages/PROPKA-3.1-py3.5.egg/propka/lib.py. If you installed propka from PyPi then this should be in there. This is the code that makes it work with propkatraj.

from propkatraj.