Comments (2)
I installed propka using the instructions in: https://github.com/jensengroup/propka-3.1
I checked my folders:
in /Users/nehade/.local/lib/python3.5/site-packages/
PROPKA-3.1-py3.5.egg is a file not a folder. And so I don't have PROPKA-3.1-py3.5.egg/propka/lib.py
I removed propka then reinstalled it using PyPi and it worked!
Many thanks
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I tried this locally (Python 3.6 on macOS 10.12 with MDAnalysis 0.19.2) and this works as expected. Did you install propka with
pip install propka
?
Check that your propka/lib.py
contains the following code https://github.com/jensengroup/propka-3.1/blob/91925bb92092d3b180a9c086e81822a3fdec6939/propka/lib.py#L16-L41 (click on the link to see the code). Your installed file is /Users/nehade/.local/lib/python3.5/site-packages/PROPKA-3.1-py3.5.egg/propka/lib.py
. If you installed propka from PyPi then this should be in there. This is the code that makes it work with propkatraj.
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Related Issues (20)
- Add powered by MDAnalysis badge HOT 1
- Reformat for MDAnalysis 2.0 HOT 1
- 2.0.0 release HOT 8
- Upgrade documentation HOT 1
- Fix coveragerc to not try to cover things that we don't need to check HOT 1
- add new pypi maintainers HOT 2
- Add propka 3.4 support HOT 2
- conda-forge package HOT 1
- only use one "main" branch HOT 2
- add doc badge to README
- Fix license HOT 3
- use CODECOV_TOKEN
- api doc formatting of argument lists messed up HOT 4
- remove CRON CI codecov
- Make python support 3.9+ HOT 3
- sphinx docs fail to build with `python setup.py build_sphinx` HOT 1
- AttributeError: module 'propkatraj' has no attribute 'get_propka' HOT 2
- Docs no longer deploy properly HOT 2
- Python 3.9 CI failing due to MDAnalysis develop supporting different py than stable
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