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bioinfokit

Bioinformatics data analysis and visualization toolkit

bioinformatics-with-python-cookbook-second-edition

Bioinformatics with Python Cookbook Second Edition, published by Packt

bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers

biojupies

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

biojupies-plugins

User-submitted RNA-seq data analysis tools for BioJupies.

biomedr

generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.

bionoinet

BionoiNet is a deep learning-based software to classify ligand-binding sites.

blood-brain-barrier-permeability-prediction

SVM-Based Prediction of BBB

bondnet

A graph neural network for the prediction of bond dissociation energies for molecules of any charge.

brain2020

Development and validation of an interpretable deep learning framework for Alzheimer's disease classification

cancer_dependency_prediction

cancer_drug_discovery

using R and H2O to assess drug viability based on NCI50 cancer cell lines

candock_benchmark

captum

Model interpretability and understanding for PyTorch

cardiotox

cell-death-signatures

Analysis code for NAR manuscript

cellar

Interactive software tool for the assignment of cell types in single-cell studies.

cellprofiler

An open-source application for biological image analysis

ch485---artificial-intelligence-and-chemistry

CH485 - Artificial Intelligence and Chemistry

char-rnn

Multi-layer Recurrent Neural Networks (LSTM, GRU, RNN) for character-level language models in Torch

chembench

MoleculeNet benchmark dataset & MolMapNet dataset

chembl

Prediction of Potential Inhibitors for Targets(From ChEMBL), Based on Tensorflow.

chembl-downloader

Write reproducible code for getting and processing ChEMBL

chembl_multitask

blogpost notebooks

chembl_sim

ChEMBL Similarity Search

chembl_structure_pipeline

ChEMBL database structure pipelines

chembl_target_predictions

Set of script used by ChEMBL group to generate target predictions

chembl_webresource_client

Official Python client for accessing ChEMBL API.

chemicalx

A PyTorch and TorchDrug based deep learning library for drug pair scoring.

cheminformatics_qsar_dnn