Compute rarefied beta diversity and simulate communities (R package). Accompanies Stier et al., "Isolating the effects of patch size and sampling effects on beta diversity via rarefaction", in prep.
Installation: for now, use library(devtools); install_github("bbolker/betararef")
(don't forget library("betararef")
to load the package). Then help(package="betararef")
to see what's available.
inst/batchfiles
contains example batch files used on a high-performance cluster (SHARCnet) to generate expected (realized) beta diversity across a broad range of community structures, sample sizes, and diversity indices.