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Home Page: spikedb.aubie.ca
License: BSD 3-Clause "New" or "Revised" License
Database and analysis software for SPIKE data files.
Home Page: spikedb.aubie.ca
License: BSD 3-Clause "New" or "Revised" License
Notes: Icon based off of image found at http://www.turbosquid.com/FullPreview/Index.cfm/ID/287220 Dependencies: GTKmm Cairo SQLite3 Boost.Python Troubleshooting: Q: When I attempt to view a file or run a python script I get the following error: Fatal Python error: Interpreter not initialized (version mismatch?) A: On a mac add this to your .bashrc or .zshrc or .yourtermrc DYLD_FRAMEWORK_PATH=/opt/local/Library/Frameworks How to build on Windows. 1) Get a coffee. 2) Book a few days off of work. 3) Install Microsoft Visual Studio C++ Express 2010 (or higher) 4) Download GTK-All-In-One windows package. Redistributing for Mac OS X --------------------------- 1) Ensure that the environment variable LDFLAGS has -header_pad_max_install_names and -headerpad in it. 2) Install MacPorts and then install all required dependencies (boost+python27, GTKmm (+no_X11, +quartz), sqlite3). 3) Use cmake_release script to build the cmake script and then run make in the SpikeDB folder. 4) Ensure that the library_magic.py script runs and pulls in all required libraries to ./build/SpikeDB.app 5) In /opt/local/share/macports/Tcl/port1.0/portconfigure.tcl set default configure.ldflags {"-L${prefix}/lib -Xlinker -headerpad_max_install_names"}
Create a plugin to calculate the last spike latency.
It should remember the last folder used to export data to.
Currently, you have to press enter but this is annoying after entering a lot of data.
Create a Microsoft Windows binary and install package.
Should show 3 lines of editable space instead of the standard 1.
Create a plugin to calculate the interspike interval.
Grey out spikes outside of window.
This will allow you to bookmark files or cells that are nice and you want easy access to in the future.
Currently, only the spike struct is saved to the database (along with the corresponding sweep and pass number). Therefore, if a stimulus presentation evoked no spikes, this information is lost. We need to also store the order of stimulus presentations and make that available to python.
Currently, there is code in sikedata.cpp that creates a vector called m_sweepOrder with a list of all the sweeps in the order of presentation. This is pulled out at spike data file parse time and should also be saved to the database.
In a related note, there should be an easy way to REPARSE existing spike files without losing any metadata but thus adding this new data to the database.
Create a plugin to calculate the vector strength for each stimulus in a file.
Instead of putting the value of NOPOINT, replace it with a "-" symbol.
Shifting them or something it seems.
It will really mirror the radio buttons just be presented in a different format.
After running a lot of scripts Python can give this error whenever you attempt to run a new script.
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