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info-rna

A Fast Approach to Inverse RNA Folding Satisfying Sequence Constraints

intarna

Efficient target prediction incorporating accessibility of interaction sites

intarna-benchmark

Data and scripts to benchmark IntaRNA

intarna-benchmark-shape

This repository contains data and analysis scripts for IntARNA's structure probing (SHAPE) extension

jitsi-instructions

local_alignment

localfold

LocalFold is a modification of the RNAplfold local folding algorithm.

marna

Enables Multiple Alignment of RNAs with fixed/given structures.

mechrna

memeris

MEMERIS integrates information about RNA secondary structures into the motif search to guide the search towards single-stranded regions.

mica

Multiple Interval-based Curve Alignment

mlls-exercise-ss22

Example solutions for the 'Machine learning in life sciences' course SS22

mutarna

natto

single cell

pankov

peakhood

Individual site context extraction for CLIP-Seq peak regions

phones-and-conference-calls

How to use the phone conferencing room

rna-playground

Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.

rnaprot

Modelling RBP binding preferences to predict RPB binding sites

salamisnake

Snakemake Piepline for CLIP data

shaker

SHApe simulation with graph KERnels

stoatydive

stoatyplatsch

training-material

A collection of training material from offered Galaxy courses