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canola_pseudomonas_rnaseq

Code and workflows related to RNAseq data from infected and control canola plants

chipexo

cleaveland4

CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA targets

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

co-expressionnetwork

Scripts and documentation of co-expression network analysis

code4cos

cole-trapnell-lab.github.io

common_scripts

my bin directory

computing-pipeline

Pipeline to Extract Plant Phenotypes from Reference Data

cookbook

csvtk

A cross-platform, efficient, practical and pretty CSV/TSV toolkit in Golang

cufflinks

cytoscape.js

Graph theory (a.k.a. network) library for analysis and visualisation (compatible with CommonJS/Node.js/Browserify/Webpack, AMD/Require.js, npm, Bower, jspm, Meteor/Atmosphere, jQuery, and plain JS/JavaScript)

d3

A JavaScript visualization library for HTML and SVG.

d3-graph-gallery

A collection of simple graphics made with D3.js

d3network

Tools for creating D3 JavaScript network graphs from R.

d3pie

A configurable pie chart lib and generator built on d3.js

data_to_art

Turning data into art

data_to_viz

Leading to the dataviz you need

datools

deepgp

A tool to implement Genomic Prediction Experiments using Deep Learning

deeptools

Tools to process and analyze deep sequencing data.

dge_workshop

dge_workshop_salmon

diploiddphylogeny

Scripts and commands associated with generating the phylogeny of the diploid D genome in cotton

dlpipeline

Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning

dom_bot

Parameterize the maize domestication bottleneck

eagle

echarts

A powerful, interactive charting and visualization library for browser

eig

Eigen tools by Nick Patterson and Alkes Price lab