On page https://aws-ia.github.io/cfn-ps-illumina-dragen/#_feedback

Section heading: Costs and licenses

Documentation issue description:

There is no cost to use this Partner Solution, but you will be billed for any AWS services or resources that this Partner Solution deploys.

But the AMI has a $15 / hr charge for the use of software.

Hey all, I am facing some issues with dragen deployment using the guide here - https://aws-ia.github.io/cfn-ps-illumina-dragen/.
I have done this before, but its been some time I and don't remember having this problem.
I just ran with "deploy in new VPC" link, here are my parameters, as seen on CloudFormation stack.

But I keep getting the following error

It looks like it fails to copy something into the bucket (or cant find source/destination?).

Since its a relatively fresh account and I didn't specify anything extra in template creation, such as IAM (I just left it empty), its strange that it fails here.

Could it be its missing from source for copying?
What direction can I take for this?

Thanks!

Hey,

When attempting to run either the somatic or germline pipeline in Dragen, the program displays a screen and remains stuck on it. Do you know how I can ı resolve this?

Hi, I am using the DRAGEN Complete Suite and using the AWS CloudStack deployment guide. When I submit a batch job, all the pre-processing steps seems to work (i.e., reference downloaded from S3 bucket, etc...) but when DRAGEN runs, it exits with the following error message:

My guess is somehow the last parameters are being passed as arguments directly to DRAGEN versus being treated as I/O pipes. Here's the command being run by the DRAGEN stack:

Executing /opt/edico/bin/dragen -f -r /ephemeral/DRAGEN/hg38/ -1 s3://XXX/temp/NA24385-AJ-Son-R1-NS_S33_L001_R1_001.fastq.gz -2 s3://XXX/temp/NA24385-AJ-Son-R1-NS_S33_L001_R2_001.fastq.gz --RGID 1 --RGSM Test --enable-bam-indexing true --enable-map-align-output true --enable-sort true --output-file-prefix output --enable-map-align true --output-format BAM --output-directory /ephemeral/9518aff5-e295-4e05-802a-f4365af3b4bd --enable-variant-caller true --output_status_file /ephemeral/9518aff5-e295-4e05-802a-f4365af3b4bd/job-speedometer.log --intermediate-results-dir /ephemeral/ --lic-no-print > /ephemeral/9518aff5-e295-4e05-802a-f4365af3b4bd/dragen_log_1704822886.txt 2>&1

I am not sure how this is happening as I am using all the default settings. Any help would be appreciated.

Hi,
I followed the Illumina DRAGEN on AWS Partner Solution Deployment Guide to deploy DRAGEN, but encountered a error during creating stack(DragenStack-ContainerBuild stage).

Some part of error info from codepipeline log file like below

Step 1 : FROM public.ecr.aws/docker/library/centos:centos7.9.2009
114 | centos7.9.2009: Pulling from docker/library/centos
115 | 2d473b07cdd5: Pulling fs layer
116 | 2d473b07cdd5: Verifying Checksum
117 | 2d473b07cdd5: Download complete
118 | 2d473b07cdd5: Pull complete
119 | Digest: sha256:be65f488b7764ad3638f236b7b515b3678369a5124c47b8d32916d6487418ea4
120 | Status: Downloaded newer image for public.ecr.aws/docker/library/centos:centos7.9.2009
121 | ---> eeb6ee3f44bd
122 | Step 2 : RUN rpm -Uvh https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm
123 | ---> Running in a9fb22e4266c
124 | curl: (22) The requested URL returned error: 404 Not Found
125 | error: skipping https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm - transfer failed
126 | Retrieving https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm
127 | The command '/bin/sh -c rpm -Uvh https://dl.fedoraproject.org/pub/epel/epel-release-latest-7.noarch.rpm' returned a non-zero code: 1
128 |  
129 | [Container] 2024/08/14 23:53:24.507010 Command did not exit successfully docker build --tag ${REPOSITORY_URI}:${TAG} . exit status 1
130 | [Container] 2024/08/14 23:53:24.510321 Phase complete: BUILD State: FAILED
131 | [Container] 2024/08/14 23:53:24.510339 Phase context status code: COMMAND_EXECUTION_ERROR Message: Error while executing command: docker build --tag ${REPOSITORY_URI}:${TAG} .. Reason: exit status 1
132 | [Container] 2024/08/14 23:53:24.549467 Entering phase POST_BUILD
133 | [Container] 2024/08/14 23:53:24.550509 Running command docker push ${REPOSITORY_URI}:${TAG}
134 | The push refers to a repository [654724916652.dkr.ecr.us-east-1.amazonaws.com/dragen-new-t1-dragenstack-10ln435tg3mi-dockerbucketrepository-p2y6xi7v4qt2-dragen-c4cpmz9xwdp8]
135 | An image does not exist locally with the tag: 654724916652.dkr.ecr.us-east-1.amazonaws.com/dragen-new-t1-dragenstack-10ln435tg3mi-dockerbucketrepository-p2y6xi7v4qt2-dragen-c4cpmz9xwdp8
136

I followed the "the Deployment steps" in guide document with default setting. Could you please help to provide some suggestions on this error?
I used AWS Region us-east-1