To compile:

g++ -std=c++11 -O3 -DNDEBUG -I ~/include -L ~/lib program.cpp -o program -lsdsl -ldivsufsort -ldivsufsort64 

-std=c++11 -O3 -DNDEBUG -I /opt/homebrew/include -L /opt/homebrew/lib -lsdsl -ldivsufsort -ldivsufsort64

g++ -std=c++11 -O3 -DNDEBUG -I ~/include -L ~/lib -lsdsl -ldivsufsort -ldivsufsort64 program.cpp -o program  

To run main

./main ./data/prop-direct-P197 ./data/prop-direct-P800 ./data/prop-direct-P1366 

In the queries folder we have all the queries to be tested grouped by the type of test:

• partial:
  • dfuds:
    • fixedQueue
    • nonFixedQueue
  • louds:
    • fixedQueue
    • nonFixedQueue
• ranked:
  • dfuds:
    • fixedQueue
    • nonFixedQueue
  • louds:
    • fixedQueue
    • nonFixedQueue
• lqdags
• traditional algorithm (Arroyuelo et al. 2022)

The script files to run the tests are in the runqueries folder. On each subfolder we have:

• Compile script: it compiles all the queries.
• Run script: it runs all the queries and put the outputs in the respective output folder.
• All the run queries to be tested with different data. The files are named as runqueries-[type of query]-bfs-sorted.sh

1. First go to the runqueries folder and choose the subfolder you want to test. For example cd runqueries/partial/dfuds/fixedQueue

2. Run the compile script (the firs)

   For GNU CC: ./compilePartialDfudsFixedQueue.sh

   For Clang: ./compilePartialDfudsFixedQueueM1.sh

3. Run the run script ./runPartialDfudsFixed.sh

1. Go to the runqueries folder cd runqueries

2. Run the compile script

   For GNU CC ./compileAllAlgorithms.sh

   For Clang ./compileAllAlgorithmsM1.sh

3. Run all scripts ./runAllAlgorithms.sh