Collective behaviour and bio-hybrid results analysis
-
A python package that includes:
- Analysis of experimental results
- Includes loaders for experimental results generated with assisipy_utils exec tools
- Also includes loader for the built-in assisipy.casu logfile
- code to compute indices including:
- collective decision index
- volatility index
-
v0.6
-
author: [email protected]
-
Install with pip
$ pip install --user --upgrade cbtb-0.6.tar.gz
-
Install editable with pip
$ git clone <repo.git> <the_path> $ cd !$ $ pip install --editable .
-
Dependencies: numpy, scipy, yaml
-
For info_theory/libinfo, JIDT must be installed (the infodynamics.jar is needed). See guide [https://github.com/jlizier/jidt/wiki/Installation]. jpype is also needed (e.g.
sudo apt-get install python-jpype
)(pip doesn't well handle the fact that ubuntu's apt has installed python-numpy -- if that is how obtained... so these are not declared in the setup.py)