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imagej-tensorflow's Introduction

Analysis in ImageJ/Fiji using TensorFlow models

Build Status

Some experimentation with creating ImageJ plugins that use TensorFlow image models.

For example, the one plugin right now pacakges the TensorFlow image recognition tutorial, in particular its Java version into a command plugin to label an opened image.

Quickstart

git clone https://github.com/asimshankar/imagej-tensorflow
cd imagej-tensorflow
mvn compile exec:java

This requires Maven. Typically brew install maven on OS X, apt-get install maven on Ubuntu, or detailed instructions otherwise.

Caveats

The code here is a proof of concept. It has some silly inefficiencies that would be dealt with real use. For example, the TensorFlow model is loaded on each invocation of the command instead of being loaded once and cached for repeated use.

imagej-tensorflow's People

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