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Baum-Welch

R package of manual implementation of Baum-Welch algorithm

Installation

Run the following command from RStudio console

devtools::install_github('arr15334/BaumWelch')

And then load the library using

library(baumw)

Usage

hmm = BaumWelch(visible, transitionMatrix, emissionMatrix, initial_distribution, iterations)

  • visible is a vector of the emitted symbols
  • transitionMatrix is the first estimation of the transition matrix A. This can be randomly initialized if there is no prior information
  • emissionMatrix is the first estimation of the emission matrix A. This can be randomly initialized if there is no prior information
  • initial_distribution is the first estimation of the initial distribution pi.
  • iterations is the number of maximum iterations that the algorithm should perform.

This will return a list containing the estimations of the transition and emission matrices.

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