arnavm / calling_cards Goto Github PK
View Code? Open in Web Editor NEWCode for processing mammalian transposon calling card data
License: BSD 3-Clause "New" or "Revised" License
calling_cards's People
Contributors
Stargazers
Watchers
calling_cards's Issues
AnnotateInsertionSites.py error
Hi, thanks for developing this good package.
I have an error when I try to follow your protocol.
The error is
Traceback (most recent call last):
File "/data/AnnotateInsertionSites.py", line 110, in
tags = getInsertionSiteTags(read)
File "/data/AnnotateInsertionSites.py", line 88, in insertionSiteTags
tags["XZ"] = fetchGenomicSequence(read.reference_name, insert - insertSiteLength, insert)
File "/data/AnnotateInsertionSites.py", line 41, in fetchGenomicSequence
return ref[chromosome][start:end].upper()
KeyError: '1'
Do you know why I have this error and how can I solve it?
Best
Chao
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.