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What is the sequence i should follow to build a correct simulation scenario?

Hello Sir,
I have been trying to contact you on your provided email since Sat, 17 Dec 2022, I wasn't lucky to get any response though.
I tried thoroughly to figure out the requested configurations of the attached files and how to run simulations using your helpful guidance.
I wanted to know, after I include normal motes, in order to include the attacker node I have to make modifications to the core files, these files are used by the normal motes as well during the simulation, would modifications affect the normal motes' behavior?
I searched a lot but no answer!
Will you please inform me or provide some guidance on how to sequence the steps to run a successful simulation scenario?

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