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prolog-practice

pyb

A phylogenetic Christmas Tree on which to hang data

pygby

A utility script with GROUP BY functionality and column statistics

qent

Remote access sequence and phylogenetic info (STUB)

r-practice

Why do you hurt me R?

ratr

DEPRECATED: See Morloc

regref

Like sed, but reads pattern and replacement expressions from columns in a table

rhmmer

Simple R utilities for working with HMMER

rmonad

Pipelines you can compute on

rnaseq-pipeline

A RNA-seq pipeline using Kallisto and bioconductor::SRAdb

rpalign

Align a sequence against an msa

rstab

An Rscript wrapper allowing easy access to tabular data

runqlite

An R binding for the unqlite database

safe-seqs

A Haskell package for safe biological sequences handling

sandr

DEPRECATED: An R interface to SAND formatted data

satsuma2

FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing

sicp-2020

solver-practice

Sandbox for playing with SAT and SMT solvers

spacegame

specifications

GFF and GVF specification documents

spiffy-c

A template for a medium sized C program

splendor

An AI for the game Splendor

sradb-app

Server and UI files for SRAdp WebApp

stratahmm

Ancestor reconstruction for gene age classifications from sequence similarity data

swig-practice

Move along, nothing to see here

synder

Trace intervals between genomes using a synteny map

synder-case-study

A case study for synder (too busy for a vignette)

synder-paper

Scripts and figures for the synder paper

synteny-wheel

Structures and algorithms for navigating circular synteny maps

systems-biology-project

Systems biology class project for BCB570