arangrhie / triobinning Goto Github PK
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Scripts for manually classifying reads and make figures
Hi Arang,
I followed this link to this repo, assuming that the R scripts here are for generating the blob plots.
I am wondering if you have any examples about how the counts
files are generated?
I assume meryl_count_asm.sh
is for that purpose but don't quite understand how to use that. Specifically, the mcdat
files and the simple-dump
commands.
I've run the trio binning parts of canu successfully, and used Peregrine in generating the diploid assembly after that.
Thanks!
Steve
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