The ggspectra from aphalo

Computing-related Skills

Programing: R, (Python), C++, (Java), C, bash, awk, Perl, sh, (FORTRAN), Modula-2, Pascal, BASIC, Forth.

Text mark up: $\LaTeX$, $\TeX$, Quarto, Rmarkdown, markdown, HTML.

Revision control systems: git, svn, (cvs), rss.

Drafting: Inkscape, OpenSCAD, Adobe Illustrator.

Image/photography: Capture One, Helicon Focus, Lumariver Profile Designer, RawDigger, VueScan, LightRoom, Photoshop.

Video- and interactive tutorials: FlashBack Pro, R shiny.

IDE/GUI’s I like

WinEdt (for $\LaTeX$, $\TeX$, with embedded R code or not), RStudio (for R scripts, Quarto and Rmarkdown), GitKraken (for git).

Elsewhere

ORCID profile: https://orcid.org/0000-0003-3385-972X

Web site for the book Learn R: As a Language.

R Packages

The sources of the R packages I have published are in public Git repositories at GitHub. Out of the packages that I have authored and maintain, 14 are currently available through CRAN. The total number of packages submissions (mostly updates) as author and maintainer is 203 since 2016-01-29.

I have published in CRAN one package update roughly every 15 days, or about 1.97 package updates per month, since 2016-01-29.

The most recent of these updates was published in CRAN on 2024-07-01.

📂 Click to expand a list of my packages at CRAN with the most recently updated one at the top.

R package	Title	Version	Date
ggpp	Grammar Extensions to ‘ggplot2’	0.5.8-1	2024-07-01
ggpmisc	Miscellaneous Extensions to ‘ggplot2’	0.6.0	2024-06-28
gginnards	Explore the Innards of ‘ggplot2’ Objects	0.2.0	2024-05-01
learnrbook	Datasets and Code Examples from P. J. Aphalo’s “Learn R” Book	2.0.1	2024-04-28
photobiologyPlants	Plant Photobiology Related Functions and Data	0.5.0	2024-04-02
photobiologySun	Data for Sunlight Spectra	0.5.0	2024-04-01
photobiology	Photobiological Calculations	0.11.2	2024-03-31
photobiologyFilters	Spectral Transmittance and Spectral Reflectance Data	0.6.0	2024-02-27
photobiologyLEDs	Spectral Data for Light-Emitting-Diodes	0.5.2	2023-11-01
photobiologyLamps	Spectral Irradiance Data for Lamps	0.5.2	2023-10-24
photobiologySensors	Response Data for Light Sensors	0.5.1	2023-10-24
photobiologyWavebands	Waveband Definitions for UV, VIS, and IR Radiation	0.5.2	2023-10-24
ggspectra	Extensions to ‘ggplot2’ for Radiation Spectra	0.3.12	2023-10-21
photobiologyInOut	Read Spectral and Logged Data from Foreign Files	0.4.27	2023-07-20

Updates under development are published at R-Universe as soon as merged or commited into the main branch in the repositories at GitHub. Two packages that depend on a commercial closed-source driver, but usable with a free runtime of the driver, are published only at R-Universe.

R-Universe profile: https://aphalo.r-universe.dev.

Posts and Pages at R for Photobiology

The site R for Photobiology contains 95 posts and pages published since 2016-09-15! I have recently rebuilt the site using Quarto, and I have transferred only some of the posts originally published using WordPress. I am slowly adding more old posts, but only those that remain relevant. The figure below shows original publication date even when posts have been later updated. The source files are in a public repository at GitHub.

I have published one post or page roughly every days, or about 1.0 posts per month, since 2016-09-15.

I published the most recent post 1 days ago.

📂 Click to expand a full list of posts.

Date	Title
2024-07-13	“R Packages: Timeline of Updates”
2024-07-10	“Multichannel LED arrays”
2024-06-11	“Move from Wordpress to Quarto”
2024-06-01	“Fitted-model labels in Markdown”
2024-05-28	“Looking back 40 years”
2024-05-16	“Is this a polynomial?”
2024-04-17	“Annotating Plot Matrices”
2024-02-10	“Repository migrated to R-Universe”
2024-01-13	“ooacquire: Spectral Irradiance Algorithms”
2023-11-27	“Linear Models”
2023-11-21	“Theoretical probability distributions”
2023-11-18	“Flow of code execution”
2023-10-30	“Introduction to Data Visualization”
2023-10-21	“photobiology 0.11.x”
2023-10-21	“Design of Experiments”
2023-09-19	“R at its simplest”
2023-08-19	“Research as a process”
2023-08-19	“Research as a process”
2023-08-14	“Multiple comparisons with ggpmisc”
2023-08-01	“Pairwise labels with ggpp”
2023-07-31	“Open Access Weather and Climate Data”
2023-07-30	“Timelines with ggplot2”
2023-06-25	“Fitted-model labels with ggpmisc and plotly”
2023-06-24	“Fitted-model labels with ggpmisc and gganimate”
2023-06-10	“ooacquire 0.4.x”
2023-06-02	“Functional analysis of spectra with photobiology to fda.usc”
2023-05-30	“Model fitting in R”
2023-05-30	“Randomization and independent replicates”
2023-05-28	“photobiology 0.10.1x”
2023-05-24	“EDA with ggplot2”
2023-05-21	“I have started using Mastodon…”
2023-05-11	“Plant photoreceptors”
2023-05-03	“ggplot2 Basics”
2023-04-27	“Spectral fluorescence with ooacquire”
2023-04-27	“ooacquire: Spectral Irradiance Measurement”
2023-04-15	“Weather data for Finland from FMI”
2023-04-10	“ooacquire 0.3.x”
2023-03-20	“OmniDriver, Java and the whims of companies”
2023-03-04	“R Packages”
2023-02-28	“Packages ggpmisc, ggpp and gginnards”
2023-02-28	“Nudging + repulsion with ggrepel and ggpp”
2023-02-27	“Website migrated to Quarto”
2023-02-27	“Fitted-model labels with ggpmisc”
2023-02-25	“Volcano and quadrant plots with ggpmisc”
2023-02-25	“Data labels in bar plots with ggpp”
2023-02-23	“ggplot insets with package ggpp”
2023-02-20	“Handbook on photobiological calculations with R”
2023-02-20	“A handbook of best practice in plant UV photobiology”
2023-02-19	“The R for Photobiology Suite”
2023-02-19	“Pedro J. Aphalo”
2023-02-18	“R, RStudio and Quarto”
2023-02-18	“Support”
2023-02-15	“About this Website”
2023-02-03	“ggspectra 0.3.10/0.3.11/0.3.12”
2023-01-05	“photobiologyWavebands 0.5.1”
2023-01-05	“photobiology 0.10.15”
2022-12-30	“Are plants and plant canopies flat?”
2022-12-23	“Visit to Universidad Austral de Chile”
2022-12-17	“Enhancing geom_text() and geom_label()”
2022-12-05	“ggpp >= 0.5.0 updates”
2022-10-18	“ooacquire 0.2.6”
2022-10-15	“An R marathon updating packages”
2022-10-15	“photobiologyInOut 0.4.25/0.4.26/0.4.27”
2022-10-15	“photobiology 0.10.14”
2022-10-15	“ggspectra 0.3.9”
2022-10-15	“gginnards >= 0.1.1 updates”
2022-10-05	“photobiology 0.10.13”
2022-10-01	“ooacquire 0.2.4 and 0.2.5”
2022-09-30	“ggpp 0.4.5”
2022-08-24	“Learn R: As a Language”
2022-08-13	“HTML5 compliance of R packages”
2022-08-13	“photobiologyWavebands 0.5.0”
2022-08-05	“ggpmisc >= 0.5.0 updates”
2022-07-23	“photobiology 0.10.12”
2022-07-10	“photobiology 0.10.11”
2022-06-15	“ggpmisc 0.4.7”
2022-05-15	“photobiologyInOut 0.4.24”
2022-05-14	“photobiologyLEDs 0.5.0”
2022-04-29	“R 4.2.0”
2022-04-16	“ggspectra 0.3.8”
2022-01-30	“Instrumentation”
2022-01-30	“Controlled Environment Chambers”
2022-01-29	“LED-based light sources”
2021-10-20	“What is plant intelligence? and what it is not?”
2021-10-17	“Sensing of solar UVA by plants”
2021-10-17	“Cryptochromes and stomatal opening”
2021-07-13	“Perception of solar UV radiation by plants”
2020-07-12	“Performance of package photobiology”
2020-04-25	“UVR8 is an UV-B and UV-A photoreceptor”
2019-04-24	“Benchmarking function `sun_angles()`”
2019-02-22	“Yoctopuce modules: Spectrometer”
2019-02-21	“Yoctopuce modules: Introduction”
2018-08-10	“Using the Quick TUV Calculator”
2017-11-24	“Article titles in the era of the internet”
2016-09-15	“For those interested in optical properties”

Posts and pages at Photo Rumblings and Whispers

The Photo Rumblings and Whispers has 27 posts since 2015-10-18! I have recently rebuilt the site using Quarto, and I have transferred most of the posts originally published using WordPress. I may add one or two old posts. The figure below shows original publication date even when posts and pages have been later updated. I have updated several of the posts and pages and I aim to continue updating them as needed. The source files are in a public repository at GitHub.

I have published one post or page roughly every days, or about 0.3 posts per month, since 2015-10-18.

I published the most recent post or page 154 days ago.

📂 Click to expand a full list of posts.

Date	Title
2024-02-11	“The nitty-gritty details of macrophotography”
2023-08-28	“Photographing Insects: Lenses”
2023-08-22	“WordPress -> Quarto”
2023-08-21	“Pedro J. Aphalo”
2023-05-13	“Flexible and oversized lens hoods”
2023-04-18	“About this Website”
2023-04-15	“UV short-pass filter stacks”
2023-04-14	“UV short-pass filters”
2023-04-12	“Notes on the OM-1 (digital) camera”
2022-10-15	“Small fill/video LED lights revisited”
2021-10-25	“Broad band VIS+NIR LEDs”
2021-08-21	“Photo Rumblings and Whispers”
2021-02-01	“NIR long-pass filters”
2020-09-29	“Hemispherical time-lapse under a tree”
2020-06-30	“Lens Adapter with Filter Drawer”
2020-06-30	“Lens Adapters: Flange-to-Flange Distance”
2020-06-12	“UV-cut filters”
2020-06-11	“UV-IR-cut filters”
2019-08-21	“A time lapse video assembled in ImageJ”
2019-07-14	“Godox AD200 flash for UV, VIS and IR photography”
2019-07-14	“Digital UVA-photography with M43 equipment”
2019-06-19	“Lautaret”
2019-05-11	“Neutral Density (ND) Filters”
2018-05-13	“Camera objectives for digital UV photography”
2017-12-12	“Black anodised aluminium in IR”
2017-10-28	“Photographs through windows”
2015-10-18	“Bracketing”

Updated 2024-07-14 10:33:58.507133

This README file is based on the blog post by Athanasia Mo Mowinckel and the R code by Martin Henze.

CRAN check failure

Correct before 2023-11-14

These are not portable: the pdf() and postscript() devices only support
characters in an 8-bit locale, usually Latin-1, and R CMD check uses
pdf(), on CRAN in a Western European UTF-8 locale where pdf() uses
Latin-1. In most cases you should be using plotmath ....

Checking with environment varianble R_CHECK_MBCS_CONVERSION_FAILURE
set to a non-empty value will throw an error in current R-devel,
although you can also grep the .Rcheck directory for 'conversion
failure.*mbcsToSbcs'

Attempts to plot Greek letters on a pdf() device are seen in the checks
of packages

DPQ DanielBiostatistics10th DoE.base EPGMr IOHanalyzer LMMstar SIRmcmc
VisualizeSimon2Stage WRTDStidal biogeom gMCPLite gamma gen3sis ggspectra
negligible oHMMed plotRCS simEd visualize

Plotmath can also be used for ∞ (utilities) ≤ (autoReg, brr, ggstats,
visualize) and ≥ (simulariatools, visualize). Some versions of R will
transliterate to e.g. <= or >= rather than substitute '.' but the use of
plotmath will look better.

NB: the issues will not be seen on a platform whose libiconv does
transliteration -- known are macOS 14 and Alpine Linux. But for example
on macOS 14, the missing Greek symbols are silently substituted by ?,
which is not useful.

[The cairo_pdf() and cairo_ps() devices handle fonts differently and can
plot a wider (but platform-dependent) range of Unicode chars. It looks
like using plotmath will suffice, but if not you could arrange for your
examples/tests to use cairo_pdf() if dev.cur() shows the current device
is pdf().]

Please correct before 2023-11-14 to safely retain your package on CRAN.

--
Brian D. Ripley, [email protected]
Emeritus Professor of Applied Statistics, University of Oxford

aphalo / ggspectra Goto Github PK

ggspectra's Introduction

Computing-related Skills

IDE/GUI’s I like

Elsewhere

R Packages

Posts and Pages at R for Photobiology

Posts and pages at Photo Rumblings and Whispers

ggspectra's People

Contributors

Stargazers

Watchers

ggspectra's Issues

Brief description of the problem

Recommend Projects

Recommend Topics

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