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popgen2018

pophistory-tutorial

Tutorial on using popular tools for learning about population history

popstats

Population genetic summary statistics

population-genomics

Population genomics

population_genomics_scripts

Scripts of population genomics analysis

porthomcl

Parallel implementation of OrthoMCL

prisms_jobs

A Python package and set of scripts used for submitting and managing cluster jobs via PBS (TORQUE) or Slurm.

pyautogui

A cross-platform GUI automation Python module for human beings. Used to programmatically control the mouse & keyboard.

pybam

Very simple, pure python, BAM file reader

pyhtslib

Reading of HTS from Python files using htslib

pypysam

PyPy-compatible htslib routines for SAM/BAM alignment files

pyrec

a sample program to show how to automate repetitive mouse and keyboard activities

python

All Algorithms implemented in Python

qtask

Python library and utility scripts for submitting jobs to batch schedulers (SGE, PBS, etc...)

ra-consensus

Simple consensus for Ra assembler's raw contig output.

ragoo

Fast Reference-Guided Scaffolding of Genome Assembly Contigs

readphaser

experimental read phasing from HapCut

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

sbs

Simple Batch Scheduler - a single user job scheduler

scripts

scripts-1

Scripts for analysis used during the course

snpgenie

Perl software for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

tutorials

vcfstats

Powerful statistics for VCF files

vg

tools for working with genome variation graphs

wang_et_al._demography

Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"

wtfpython-cn

wtfpython的中文翻译/施工结束/ 能力有限，欢迎帮我改进翻译

zindex

Create an index on a compressed text file