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django_concoct

Django pet project to keep track of concoct results and benchmarks

dotfiles

All my configuration files

dwuir

Demultiplexing With UMIs in the Index Read

eggnog_to

Scripts to transfer your eggnog annotations to ec-numbers via uniprot

environmentmicrobedb

A Ruby on Rails application for microbial diversity data from natural environments

exon_protein_domain

Correlation of protein domains with exon boundaries.

exoseq

Exome Sequencing analysis pipeline (Work in progress)

fastapi_demo

Just trying out FastAPI for the first time

flask-by-example

garden

Pet project to manage garden duties and practice programming

gattaca-public

Lightweight metagenomic binning

genologics

Python interface to the GenoLogics LIMS server via its REST API.

genologics_sql

Python interface for the Genologics Postgres database.

groopm

Metagenomic binning suite

home_page_react

Trying out a personal react page

home_storage

Hobby project to keep track of things

irma-provision

Ansible playbooks for provisioning NGI pipeline and related sw

kallisto-tryout

Trying out kallisto for metagenomics

kitchen_duty

Corridor Rules for Kitchen Duty

lims2db

lims_dashboard

logos

contains logos for nf-core

mag

UNDER CONSTRUCTION: Assembly, binning and annotation of metagenomes.

masmvali

MASMVALI (Metagenomic ASseMbly VALIdation) is an assembly validator for metagenomics with known reference genomes.

masmvali-publication

MASMVALI Publication

metagenomics-workshop

Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

miarka-provision

Ansible playbooks for provisioning NGI cluster Miarka

msc_thesis

msc_thesis.scripts

The scripts used in msc_thesis project.