This is a nonsense repos for the pythonkurs.
alneberg Goto Github PK
Name: Johannes Alneberg
Type: User
Company: National Genomics Infrastructure
Location: Stockholm
Johannes Alneberg's Projects
2015-04-barm-concoct
Running concoct for BARM using snakemake
alneberg
pythonkurs
alneberg.com
Personal (family) web page source code
alneberg.github.io
Personal Blog
anglerfish
Codename: Anglerfish
apeltzer.github.io
My personal homepage running with hugo and academic template.
august19
Homepage
barm_web_server
Baltic sea Reference Metagenome web server
bb2490
Course material for BB2490
bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
bcbio-nextgen-deploy
Suite of scripts to automatically deploy nextgen pipeline
benchmark_demultiplexing
Some scripts to benchmark demultiplexing on our NGI infrastructure
bic_gaussian
bioconda-recipes
Conda recipes for the bioconda channel.
bu
Bioinformatic Utilities
cami_15_03
Cami Challenge
charon
Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.
cogler
Summarise and visualise COG annotations for metagenomic contigs
command_line_tips_and_tricks
A presentation of some useful tips and tricks
concoct
Clustering cONtigs with COverage and ComposiTion
concoct-graphs
Minimal web server to handle nvd3 plotting for thesis project
concoctr
Run CONCOCT in a burst on UPPMAX for thesis project.
configs
Config files used to define parameters specific to compute environments at different Institutions.
conv_scripts
Convenient scripts to have around different places
cookiecutter
Template for your own top-end Nextflow pipeline, customised using Cookiecutter
cookiecutter-project-template
Template for creating my preferred project structure for bioinformatic projects.
cookiecutter-pypackage
Cookiecutter template for a Python package. See https://github.com/audreyr/cookiecutter.
cosmid
Genomics database manager
courses
Course homepages for some of the courses given at SciLifeLab
dailyread
The NGI Daily Read
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