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Home Page: http://www.akokkalis.info/s6model/
License: GNU General Public License v3.0
Data-poor fish stock assessment using the single species, size structured, steady state model
Home Page: http://www.akokkalis.info/s6model/
License: GNU General Public License v3.0
Per default, all parameters have fixed values and are not estimated, but one has to be able to estimate the ones needed.
A standard, reasonable input data format is needed
Also output options (txt files, RData files) should be possible. The output files should be valid input files to allow sharing
The estimation returns Wfs equal to 1000 and eta_F equal to 0.05 without respect to Winf.
eta_F has to be 0.05 and Wfs has to be Winf*0.05.
When running the vingette example we get the following error message
res <- makeAssessment(ebcoddat, fnout = NULL, isSurvey = TRUE, nsample = 10, eta_S = 1e-10, a.mean = 0.5, a.sd = 0.2)
Error in reps[notConv] <- NULL : invalid subscript type 'list'
In addition: Warning message:
In sqrt(unlist(tmp)) : NaNs produced
The error seems to originate in the getCI() function. The model does not run after this.
ifelse
has changed in R3.1. Now it allows to be used as ifelse(a, x, y)
as a replacement of if(a) x else y
Use all.equal instead !=
To remove the warning from R CMD check
Add class (or just check if df and sample are there)
There are the mcfork
and mcexit
functions, but they are not exported by the parallel
package. Check mcparallel
for a possible solution.
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