Comments (2)
Duplicate of #14?
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Great minds think alike? Going ahead and closing this, whoops.
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Related Issues (20)
- Document stub workflow
- More stub tests
- Update QC report based on CITE-seq post-processing HOT 2
- Idea: Include R package versions in QC report HOT 3
- Prepare for scpca-nf release v0.5.1
- Update ADT filtering to not perform filtering HOT 1
- Rename CITEseq to adt HOT 5
- Handle altExps with AnnData output HOT 2
- Accommodate bulk fastq files without `R1` in the file name HOT 5
- Plan new scpca-nf release with CITE-seq post-processing HOT 13
- scpca-nf release v0.5.2 HOT 2
- Consider AnnData & CITE-seq postprocessing HOT 4
- Ensure output metadata is complete HOT 5
- Remove adt_name usage HOT 1
- Bump scpcaTools docker image to v0.2.2 HOT 1
- Update the SingleR workflow to take as input a single model and output a single set of annotations using label.ont HOT 5
- Add Cell level metadata to AnnData objects
- Document addition of AnnData output objects
- Add row level metadata to AnnData objects
- Update example outputs to reflect AnnData
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