structuralnetworks

structuralvariantannotation

R package designed to simplify structural variant analysis

stuartlab-circleplotter-py

python tool for drawing CircleMap images

styles

Official repository for Citation Style Language (CSL) citation styles.

subcloneseeker

Computational Framework to reconstructing tumor clone structures

sufam

Super sensitive mutation validator, uses sam/bam and vcf

suppa

SUPPA: Fast quantification of differential splicing

suppa_supplementary_data

Supplementary data

supplementary

supplementary-1

survminer

Survival Analysis and Visualization

sv_tools

A few tools for plotting and reasoning about genomic structural variants.

svaba

Structural variation and indel detection by local assembly

switchseq

A tool to identify, annotate and visualise splicing switch events from RNA-seq data

tcga

tcr

tcR: an R package for immune receptor repertoire advanced data analysis.

teachingmaterial

RNA-seq data analysis practical

teachingmaterial-1

Various teaching material

tensorflow-advanced-segmentation-models

A Python Library for High-Level Semantic Segmentation Models based on TensorFlow and Keras with pretrained backbones.

tfce_mediation

Fast regression and mediation analysis of vertex or voxel MRI data with TFCE

tmisc

tophat_cufflinks_rnaseq

RNA-Seq Analysis Pipeline: Maps RNA-Seq data and assesses expression using Tophat and Cufflinks

topiary

Predict mutated T-cell epitopes from sequencing data

tracer

TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data

treeomics

Decrypting somatic mutation patterns to reveal the evolution of cancer

tutorial

varcode

Library for manipulating genomic variants and predicting their effects

vast-tools

A toolset for profiling alternative splicing events in RNA-Seq data.

vcfr

Tools to work with variant call format files

vdjdb-db

Git-based TCR database storage & management. Submissions welcome!