Akshay Paropkari's Projects
Carpentry workshop for GROW
DC Carpentry workshop organized by Texas Digital Libraries (archived)
My GitHub profile
My personal webpage
BiasAway will improve TFBS enrichment analyses and the applied analysis of ChIP-Seq data, particularly for the annotation of reliable TFBSs within ChIP-Seq peaks.
An analysis workflow for analyzing transcription factor-DNA binding data from CUT&RUN experiments.
Discover transcription factor (TF) binding specificities/sites (TFBS) using binding site motif sequence and structural information.
A collection of scripts.
Wiki and example on how to use the Merced Cluster.
Stores scripts I commonly use during bioinformatic analysis so I don't have to dig through old code
pipeline to place taxa in a phylogeny using NGS reads
Tools for phylogenetic data analysis including visualization and cluster-computing support.
Project documentation for QIIME-tools
Learning Git and GitHub workflow
Repo of practice scripts that may or may not be useful for various bioinformatic purposes
:page_with_curl: Data Carpentry Python lessons on ecology.
A list of semi to fully remote-friendly companies in tech.
Preprocessing and differential expression analysis for QuantSeq 3' mRNA-seq data
scikit-learn: machine learning in Python
Covers the following bash commands cat, chmod, cd, cp, curl, head, history, ls, less, man, mkdir, mv, nano, pwd, rm, tail, wc, wget
Solving a three circle venn diagram word problem using pandas and matplotlib Python libraries
Download market data from Yahoo! Finance's API