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suffix's Introduction

Final project for Computational Biology class

Team Daigurren: Suffix Tree, LCS, Ukkonen's algorithm
Things you need to have installed:
  • Github terminal
  • Eclipse IDE
Setup Instructions:
  1. Clone the repo using following command in terminal:
    git pull https://github.com/akarki15/suffix.git
  2. Open Eclipse. Go to File -> Import to open the Import dialog box.
  3. Select Existing Projects into Workspace. Click Next.
  4. Choose Select root directory. Browse to the location where you cloned the repo in step 1.
  5. Uncheck Copy projects into workspace to avoid making a duplicate copy of the repo.
  6. Select Finish
Checking the status of local repo:

You can see the changes you made by browsing to the local repo's location in terminal and using the git statuscommand. This shows the differences of local repo compared to the head of main branch (of remote server).

Commiting and pushing changes:
After you make changes to the local repo, you can commit and push changes to the main branch.
  1. Use git add . to track all the new files you might have added to the local repo. This adds all the files you created to remote server. Or you can manually add individual files. Check out git --help add for more info.
  2. Use git commit -m "<your message goes here>" to commit the changes you have made. Note, This does not update the remote github repo.
  3. Use git push to push the changes to remote server. More info here.

suffix's People

Contributors

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