Kim, Byungju PhD

last update : August 19, 2021

• This repository is maintained and developed by Byungju Kim for various data analysis purpose.

• Package Dependencies

  • tidyverse

  # Install the the development version from GitHub:
  # install.packages("devtools")
  devtools::install_github("airbj31/BKlibR")

• requst : load multiple library quietly if the library not exists, it tries to install the library from CRAN

• read12toAdd read 12 coded plink file generated by plink --recode 12 to additive-model or one-hot encoded matrix. father, motherm sex, and affection status are ignored.

  read12toAdd(ped,map,onehot=f)

• describe_df simple exploratory data ananysis on the given data. when the available

  describe_df(starwars,show_freq=T)

• BKtbl base R's table() extension which unlist() list object when the given data is list. this function is used in gauge_df()

  BKtbl(starwars$films)

• shuffle distance matrix
  • x - distance matrix object
  • seed - random seed for reproductive shuffling.

  shuf.dist(x,seed)

• currently, mafft is used for alignment.