airbj31 Goto Github PK

gala

Long-reads Gap-free Chromosome-scale Assembler

getandcleandata

this is temporary repo for the last program assignment

git-fundamentals

A starting point for discovering the wonderful world of Git, GitHub, and Git Annex (Assistant)

labs

Rmd source files for the HarvardX series PH525x

learngit

Repository for self-studying git and github

learningr

Let's Learn R

llama-chat

A boilerplate for creating a Llama 2 chat app

mistral-finetune

ntlink

Minimizer-based assembly scaffolding and mapping using long reads

ont_tutorial_basicqc

A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt

owltools

OWLTools

r-bootcamp-2016

r-for-data-science

D-Lab R-intensive teaching materials

ragoo

RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag

readingpapers

A guide to reading scientific papers

repdata_peerassessment1

Peer Assessment 1 for Reproducible Research

reprsearch

rmarkdown

Study and Examples about Rmarkdown for Reproducible research

rticles

LaTeX Journal Article Templates for R Markdown

savio-biostat-2016

Materials for presentation on use of the Savio campus cluster for UC Berkeley Biostatistics researchers, focusing on job submission, parallel R, and storing/transferring large datasets.

shiny-examples

snphancers

spark-workshop-2014

Materials for Chris Paciorek's workshop on MapReduce and distributed computing using Spark, November 2014

sra-tools

SRA Tools

stat243-fall-2013

Class repository for fall 2013 Statistics 243 (Intro to Statistical Computing) at UC Berkeley

synology-gitlab-setup

This tutorial explains how to install a complete GitLab environment, including GitLab Runner and GitLab Container Registry, with the Synology DiskStation Manager (DSM).

tutorial-git-basics

Tutorial on the basics of Git using BCE

tutorial-parallel-distributed

Tutorial on parallelization tools for distributed computing (multiple computers or cluster nodes) in R, Python, Matlab, and C.

ucbdonner

UCBDonnerLab

variant-calling-pipeline-gatk4

Variant Calling Pipeline Using GATK4 and Nextflow